| 2026 | ACL | Check Your Work: Structured Checklist Feedback for Improving Large Language Models. | Jonathan Cook, Tim Rocktschel, Jakob Nicolaus Foerster, Dennis Aumiller, Alex Wang |
| 2025 | GLOBECOM | Impact of Differentials in SIMON32 Algorithm for Lightweight Security of Internet of Things. | Jonathan Cook, Sabih ur Rehman, M. Arif Khan |
| 2025 | ICML | Ad-Hoc Human-AI Coordination Challenge. | Tin Dizdarevic, Ravi Hammond, Tobias Gessler, Anisoara Calinescu, Jonathan Cook, Matteo Gallici, Andrei Lupu, Jakob Nicolaus Foerster |
| 2022 | CLUSTER | IncProf: Efficient Source-Oriented Phase Identification for Application Behavior Understanding. | Omar Aaziz, Mohammad Al-Tahat, Strahinja Trecakov, Jonathan Cook |
| 2021 | ECIR | Detecting and Forecasting Misinformation via Temporal and Geometric Propagation Patterns. | Qiang Zhang, Jonathan Cook, Emine Yilmaz |
| 2018 | CLUSTER | A Methodology for Characterizing the Correspondence Between Real and Proxy Applications. | Omar Aaziz, Jeanine E. Cook, Jonathan Cook, Tanner Juedeman, David Richards, Courtenay Vaughan |
| 2018 | CLUSTER | Modeling Expected Application Runtime for Characterizing and Assessing Job Performance. | Omar Aaziz, Jonathan Cook, Mohammed Tanash |
| 2017 | CLUSTER | YAViT (Yet Another Viz Tool): Raising the Level of Abstraction in End-User HPC Interactions. | Omar Aaziz, Ujjwal Panthi, Jonathan Cook |
| 2015 | CLUSTER | Push Me Pull You: Integrating Opposing Data Transport Modes for Efficient HPC Application Monitoring. | Omar Aaziz, Jonathan Cook, Hadi Sharifi |
| 2013 | ICSE | Binary instrumentation support for measuring performance in OpenMP programs. | Mustafa Elfituri, Jeanine E. Cook, Jonathan Cook |
| 2012 | ISSRE | Compositional Verification of Sensor Software Using Uppall. | Mustafa Hammad, Jonathan Cook |
| 2012 | ISSRE | TEAMS: A Special-Purpose AOP Framework for Runtime Monitoring. | Amjad Nusayr, Jonathan Cook, Gholamali Rahnavard |
| 2012 | SEKE | Towards More Generic Aspect-Oriented Programming: Rethinking the AOP Joinpoint Concept. | Jonathan Cook, Amjad Nusayr |
| 2009 | ICCCN | Lightweight Deployable Software Monitoring for Sensor Networks. | Mustafa Hammad, Jonathan Cook |
| 2009 | SEKE | Extending AOP to Support Broad Runtime Monitoring Needs. | Amjad Nusayr, Jonathan Cook |
| 2003 | SIGGRAPH | Real-time photo-realistic augmented reality for interior design. | Jonathan Cook, Simon Gibson, Toby Howard, Roger J. Hubbold |
| 2002 | ISMAR | Accurate Camera Calibration for Off-line, Video-Based Augmented Reality. | Simon Gibson, Jonathan Cook, Toby Howard, Roger J. Hubbold, Daniel Oram |
| 2002 | SIGGRAPH | ICARUS: interactive reconstruction from uncalibrated image sequences. | Simon Gibson, Jonathan Cook, Toby Howard, Roger J. Hubbold |
| 2002 | SIGGRAPH | DIVIPRO: Distributed Interactive VIrtual PROtotoyping. | Mashhuda Glencross, James Marsh, Jonathan Cook, Sylvain Daubrenet, Steve Pettifer, Roger J. Hubbold |
| 2001 | VR | Exploring Realtime Visualisation of Large Abstract Data Spaces with QSPACE. | Steve Pettifer, Jonathan Cook, John A. Mariani, Jonathan Trevor |
| 2000 | VRST | DEVA3: architecture for a large-scale distributed virtual reality system. | Steve Pettifer, Jonathan Cook, James Marsh, Adrian J. West |
| 1999 | VRST | GNU/MAVERIK: a micro-kernel for large-scale virtual environments. | Roger J. Hubbold, Jonathan Cook, Martin J. Keates, Simon Gibson, Toby Howard, Alan Murta, Adrian J. West, Steve Pettifer |