| 2017 | RECOMB | On the Rank-Distance Median of 3 Permutations. | Leonid Chindelevitch, Joo Meidanis |
| 2016 | WorldCIST | A Visualization-Based Approach for Project Portfolio Selection. | Celmar Guimares da Silva, Joo Meidanis, Arnaldo Vieira Moura, Maria Anglica Souza, Paulo Viadanna Jr., Gabriel A. Costa Lima, Rafael S. V. de Barros |
| 2013 | WABI | On the Matrix Median Problem. | Joo Paulo Pereira Zanetti, Priscila Biller, Joo Meidanis |
| 2009 | WABI | SCJ: A Variant of Breakpoint Distance for Which Sorting, Genome Median and Genome Halving Problems Are Easy. | Pedro Feijo, Joo Meidanis |
| 2003 | SPIRE | Current Challenges in Bioinformatics. | Joo Meidanis |
| 2002 | SPIRE | Sorting by Prefix Transpositions. | Zanoni Dias, Joo Meidanis |
| 2001 | SPIRE | Genome Rearrangements Distance by Fusion, Fission, and Transposition is Easy. | Zanoni Dias, Joo Meidanis |
| 2000 | SPIRE | A New Approach for Approximating the Tranposition Distance. | Maria Emlia Telles Walter, Zanoni Dias, Joo Meidanis |
| 1998 | LATIN | On the Clique Operator. | Marisa Gutierrez, Joo Meidanis |
| 1998 | SPIRE | Reversal and Transposition Distance of Linear Chromosomes. | Maria Emlia Telles Walter, Zanoni Dias, Joo Meidanis |
| 1995 | LATIN | On Edge-Colouring Indifference Graphs. | Celina M. H. de Figueiredo, Joo Meidanis, Clia Picinin de Mello |