| 2020 | BIBE | Classification of oesophagic early-stage cancers: deep learning versus traditional learning approaches. | Jorge Ferreira, Ins Domingues, Olga Sousa, Ins Sampaio, Joo A. M. Santos |
| 2019 | PACBB | Troppo - A Python Framework for the Reconstruction of Context-Specific Metabolic Models. | Jorge Ferreira, Vtor Vieira, Jorge Gomes, Sara Correia, Miguel Rocha |
| 2019 | QUATIC | Android Testing Crawler. | Jorge Ferreira, Ana C. R. Paiva |
| 2018 | PACBB | Metabolite Integration Pipeline for the Improvement of Human Metabolic Models. | Vtor Vieira, Jorge Ferreira, Rben Rodrigues, Miguel Rocha |
| 2016 | PACBB | Reconstruction of Metabolic Models for Liver Cancer Cells. | Jorge Ferreira, Sara Correia, Miguel Rocha |
| 2012 | FUSION | Cardiovascular event risk assessment - Fusion of individual risk assessment tools applied to the Portuguese population. | Simo Paredes, Teresa Rocha, Paulo Carvalho, Jorge Henriques, Joo Morais, Jorge Ferreira, Miguel Mendes |
| 2004 | ESANN | Data Mining Techniques on the Evaluation of Wireless Churn. | Jorge Ferreira, Marley M. B. R. Vellasco, Marco Aurlio Cavalcanti Pacheco, Carlos R. Hall Barbosa |