| 2026 | DATA | Scalable Data Management for Smart Campus Digital Twin Applications. | Lus Carlos Afonso, Joo Rafael Almeida, Jos Lus Oliveira |
| 2026 | DATA | A Serverless Client-Side Privacy Index for Sensitive Data Processing. | Jos Gameiro, Jos Lus Oliveira, Joo Rafael Almeida |
| 2026 | ICORES | Optimizing Job Rotation in Assembly Lines by Balancing Productivity and Worker Well-Being. | Joana Rafaela Almeida, Joo Rafael Almeida, Jos Lus Oliveira |
| 2026 | SECRYPT | Managing Cybersecurity Compliance with Structured Guidance and Integrated Audit Support. | Mariana Andrade, Joo Rafael Almeida, Jos Lus Oliveira |
| 2026 | SIMULTECH | A Predictive Data-Driven Framework for Multi-Line Manufacturing Throughput Analysis. | Joana Rafaela Almeida, Raquel Paradinha, Lus Carlos Afonso, Joo Rafael Almeida, Jos Lus Oliveira |
| 2026 | SIMULTECH | A Governance and Architectural Framework for Agentic AI-Driven Gamified Security Awareness. | Lus Filipe Gomes, Lus Miguel Batista, Antnio Deus, Jos Lus Oliveira, Joo Rafael Almeida |
| 2025 | CBMS | A Comparative Analysis of Ai-Based Solutions for Clinical Documentation. | Lus Carlos Afonso, Joo Rafael Almeida, Jos Lus Oliveira |
| 2025 | CBMS | An Embedding-Based Method for Processing Medical Audio into Structured Reports. | Lus Carlos Afonso, Carolina Gonalves, Catarina Sousa, Jos Lus Oliveira |
| 2025 | CBMS | An Embedding-Based Machine Learning Solution for Medical Concept Mapping. | Vicente Barros, Raquel Paradinha, Joo Rafael Almeida, Jos Lus Oliveira |
| 2025 | CBMS | A Federated Random Forest Solution for Secure Distributed Machine Learning. | Alexandre Cotorobai, Jorge Miguel Silva, Jos Lus Oliveira |
| 2025 | CoDIT | Graph-based Optimization for Assembly Line Balancing Incorporating Metabolic Restrictions. | Joana Rafaela Almeida, Ana Moura, Joo Rafael Almeida, Jos Lus Oliveira |
| 2025 | ISCC | Securing DevOps by Identifying the Most Common Vulnerabilities in CI/CD Pipelines. | Lus Miguel Batista, Dinis Barroqueiro Cruz, Dimitri Silva, Joo Rafael Almeida, Jos Lus Oliveira |
| 2024 | CBMS | Assessing the feasibility of observational data sources for multicenter clinical studies. | Joo Rafael Almeida, Peter R. Rijnbeek, Maxim Moinat, Jos Lus Oliveira |
| 2024 | CBMS | HealthDBFinder: a question-answering task for health database discovery. | Joo Rafael Almeida, Jorge Miguel Silva, Lus Carlos Afonso, Tiago Melo Almeida, Rui Antunes, Richard A. A. Jonker, Joo Antnio Reis, Dimitri Alexandre da Silva, Srgio Matos, Jos Lus Oliveira |
| 2023 | CBMS | A FAIR Approach to Real-World Health Data Management and Analysis. | Joo Rafael Almeida, Jorge Miguel Silva, Jos Lus Oliveira |
| 2023 | CBMS | SecureFASTA: Ensuring privacy and trust when sharing genomic data. | Diniz Cruz, Joo Rafael Almeida, Jorge Miguel Silva, Jos Lus Oliveira |
| 2023 | CBMS | A Multimodal Image Registration System for Histology Images. | Rodrigo Escobar Daz Guerrero, Yubraj Gupta, Thomas Bocklitz, Jos Lus Oliveira |
| 2023 | EPIA | DyPrune: Dynamic Pruning Rates for Neural Networks. | Richard Adolph Aires Jonker, Roshan Poudel, Olga Fajarda, Jos Lus Oliveira, Rui Pedro Lopes, Srgio Matos |
| 2022 | ADBIS | Automatic Classification of Stigmatizing Articles of Mental Illness: The Case of Portuguese Online Newspapers. | Alina Yanchuk, Alina Trifan, Olga Fajarda, Jos Lus Oliveira |
| 2022 | CBMS | A secure architecture for exploring patient-level databases from distributed institutions. | Joo Rafael Almeida, Joo Paulo Barraca, Jos Lus Oliveira |
| 2022 | CBMS | Combining heterogeneous patient-level data into tranSMART to support multicentre studies. | Joo Rafael Almeida, Lus Bastio Silva, Alejandro Pazos, Jos Lus Oliveira |
| 2022 | CBMS | Visualising Time-evolving Semantic Biomedical Data. | Arnaldo Pereira, Joo Rafael Almeida, Rui Pedro Lopes, Jos Lus Oliveira |
| 2022 | COLING | BioInfo@UAVR@SMM4H'22: Classification and Extraction of Adverse Event mentions in Tweets using Transformer Models. | Edgar Morais, Jos Lus Oliveira, Alina Trifan, Olga Fajarda |
| 2022 | PACBB | The NAD Interactome, Identification of Putative New NAD-Binding Proteins. | Sara Duarte-Pereira, Srgio Matos, Jos Lus Oliveira, Raquel M. Silva |
| 2021 | CBMS | An Architecture to Define Cohorts over Medical Imaging Datasets. | Joo Rafael Almeida, Eriksson J. Melicio Monteiro, Jos Lus Oliveira |
| 2021 | CBMS | Improvements in lymphocytes detection using deep learning with a preprocessing stage. | Rodrigo Escobar Daz Guerrero, Jos Lus Oliveira |
| 2021 | CBMS | Easing the Questioning of Semantic Biomedical Data. | Arnaldo Pereira, Rui Pedro Lopes, Jos Lus Oliveira |
| 2021 | CBMS | A Comparative Analysis of Data Platforms for Rare Diseases. | Mariana Sequeira, Joo Rafael Almeida, Jos Lus Oliveira |
| 2020 | BIBE | Exploring a Siamese Neural Network Architecture for One-Shot Drug Discovery. | Luis H. M. Torres, Nelson R. C. Monteiro, Jos Lus Oliveira, Joel Arrais, Bernardete Ribeiro |
| 2020 | CBMS | A Recommender System to Help Discovering Cohorts in Rare Diseases. | Joo Rafael Almeida, Eriksson J. Melicio Monteiro, Lus A. Bastio Silva, Alejandro Pazos Sierra, Jos Lus Oliveira |
| 2020 | CBMS | Multi-language Concept Normalisation of Clinical Cohorts. | Joo Rafael Almeida, Jos Lus Oliveira |
| 2020 | ECIR | Understanding Depression from Psycholinguistic Patterns in Social Media Texts. | Alina Trifan, Rui Antunes, Srgio Matos, Jos Lus Oliveira |
| 2020 | PACBB | Machine Learning for Depression Screening in Online Communities. | Alina Trifan, Rui Antunes, Jos Lus Oliveira |
| 2019 | CBMS | GenericCDSS - A Generic Clinical Decision Support System. | Joo Rafael Duarte de Almeida, Jos Lus Oliveira |
| 2019 | ICMV | Image selection based on low level properties for lifelog moment retrieval. | Ricardo F. Ribeiro, Antnio J. R. Neves, Jos Lus Oliveira |
| 2018 | CBMS | Simplifying the Digitization of Clinical Protocols for Diabetes Management. | Joo Rafael Almeida, Joana Guimaraes, Jos Lus Oliveira |
| 2018 | CBMS | Services Orchestration and Workflow Management in Distributed Medical Imaging Environments. | Joo Rafael Almeida, Tiago Marques Godinho, Lus A. Bastio Silva, Carlos Costa, Jos Lus Oliveira |
| 2018 | CBMS | A FAIR Marketplace for Biomedical Data Custodians and Clinical Researchers. | Alina Trifan, Jos Lus Oliveira |
| 2018 | HealthCom | Simplifying biomedical data sharing through a web portal generator. | Andre Malta, Jos Lus Oliveira |
| 2016 | CBMS | Ensemble-Based Methodology for the Prediction of Drug-Target Interactions. | Edgar D. Coelho, Joel P. Arrais, Jos Lus Oliveira |
| 2016 | CBMS | Caching and Prefetching Images in a Web-Based DICOM Viewer. | Eriksson J. Melicio Monteiro, Carlos Costa, Jos Lus Oliveira, David Campos, Lus A. Bastio Silva |
| 2015 | IIWAS | Ann2RDF: moving annotations to semantic web. | Pedro Sernadela, Srgio Matos, Jos Lus Oliveira |
| 2014 | DCAI | Extracting Sentences Describing Biomolecular Events from the Biomedical Literature. | Tiago Nunes, Srgio Matos, Jos Lus Oliveira |
| 2014 | PACBB | Mutation Analysis in PARK2 Gene Uncovers Patterns of Associated Genetic Variants. | Lusa Castro, Jos Lus Oliveira, Raquel M. Silva |
| 2014 | PACBB | A Nanopublishing Architecture for Biomedical Data. | Pedro Sernadela, Eelke van der Horst, Mark Thompson, Pedro Lopes, Marco Roos, Jos Lus Oliveira |
| 2013 | CBMS | Integrating echocardiogram reports with medical imaging. | Lus A. Bastio Silva, Samuel Campos, Carlos Costa, Jos Lus Oliveira |
| 2013 | CBMS | A multi-domain platform for medical imaging. | Carlos Viana-Ferreira, Carlos Costa, Jos Lus Oliveira |
| 2013 | DCAI | Structuring and Exploring the Biomedical Literature Using Latent Semantics. | Srgio Matos, Hugo Arajo, Jos Lus Oliveira |
| 2013 | HealthCom | A DICOM viewer based on web technology. | Eriksson J. Melicio Monteiro, Carlos Costa, Jos Lus Oliveira |
| 2013 | HealthCom | Leveraging XDS-I and PIX workflows for validating cross-enterprise patient identity linkage. | Lus S. Ribeiro, Frederico Honorio, Jos Lus Oliveira, Carlos Costa |
| 2013 | HealthCom | Exploring nanopublications integration in pharmacovigilance scenarios. | Pedro Sernadela, Pedro Lopes, Jos Lus Oliveira |
| 2013 | PACBB | Quantitative Characterization of Protein Networks of the Oral Cavity. | Fernanda Correia Barbosa, Joel P. Arrais, Jos Lus Oliveira |
| 2013 | PACBB | Analysing Relevant Diseases from Iberian Tweets. | Vctor M. Prieto, Srgio Matos, Manuel lvarez, Fidel Cacheda, Jos Lus Oliveira |
| 2012 | CBMS | Dicoogle relay - a cloud communications bridge for medical imaging. | Carlos Viana-Ferreira, Carlos Costa, Jos Lus Oliveira |
| 2012 | PACBB | Parameter Influence in Genetic Algorithm Optimization of Support Vector Machines. | Paulo Gaspar, Jaime G. Carbonell, Jos Lus Oliveira |
| 2012 | PACBB | A Rare Disease Patient Manager. | Pedro Lopes, Rafael Mendona, Hugo Rocha, Jorge Oliveira, Laura Vilarinho, Rosrio Santos, Jos Lus Oliveira |
| 2011 | PACBB | Prioritizing Literature Search Results Using a Training Set of Classified Documents. | Srgio Matos, Jos Lus Oliveira |
| 2010 | IC3K | Recognition of Gene/Protein Names using Conditional Random Fields. | David Campos, Srgio Matos, Jos Lus Oliveira |
| 2009 | EPIA | Syntactic Parsing for Bio-molecular Event Detection from Scientific Literature. | Srgio Matos, Anabela Barreiro, Jos Lus Oliveira |
| 2009 | IC3K | Link Integrator - A Link-based Data Integration Architecture. | Pedro Lopes, Joel Arrais, Jos Lus Oliveira |
| 2009 | IC3K | Arabella - A Directed Web Crawler. | Pedro Lopes, Davide Pinto, David Campos, Jos Lus Oliveira |
| 2009 | IM | An evaluation of network management protocols. | Pedro Gonalves, Jos Lus Oliveira, Rui L. Aguiar |
| 2009 | IWANN | DynamicFlow: A Client-Side Workflow Management System. | Pedro Lopes, Joel Arrais, Jos Lus Oliveira |
| 2009 | IWANN | Analysing the Evolution of Repetitive Strands in Genomes. | Jos P. Lousado, Jos Lus Oliveira, Gabriela R. Moura, Manuel A. S. Santos |
| 2008 | IIWAS | Dynamic service integration using web-based workflows. | Pedro Lopes, Joel Arrais, Jos Lus Oliveira |
| 2003 | IM | Delegation of Expressions for Distributed SNMP Information Processing. | Rui Pedro Lopes, Jos Lus Oliveira |
| 2003 | ICWE | Critical Information Systems Authentication Based on PKC and Biometrics. | Carlos Costa, Jos Lus Oliveira, Augusto Silva |
| 2003 | ICWE | Electronic Patient Record Virtually Unique Based on a Crypto Smart Card. | Carlos Costa, Jos Lus Oliveira, Augusto Silva |
| 2001 | IM | SNMP Management of MASIF Platforms. | Rui Pedro Lopes, Jos Lus Oliveira |
| 1994 | NOMS | A Methodology to Represent Logical Network Topology Information. | Jos Lus Oliveira, Joaquim Arnaldo Martins |