| 2021 | IGARSS | Fuel Break Vegetation Monitoring with Sentinel-2 NDVI Robust to Phenology and Environmental Conditions. | Joo E. Pereira-Pires, Valentine Aubard, Rita A. Ribeiro, Jos Manuel Fonseca, Joo M. N. Silva, Andr Mora |
| 2019 | CEC | Use of Particle Swarm Optimization in Terrain Classification based on UAV Downwash. | Iuliia Kim, Joo Pedro Matos-Carvalho, Ilya I. Viksnin, Lus Miguel Campos, Jos Manuel Fonseca, Andr Mora, Sergey Chuprov |
| 2018 | FedCSIS | UAV downwash dynamic texture features for terrain classification on autonomous navigation. | Joo Pedro Matos-Carvalho, Jos Manuel Fonseca, Andr Damas Mora |
| 2016 | SIMULTECH | An Image Generator Platform to Improve Cell Tracking Algorithms - Simulation of Objects of Various Morphologies, Kinetics and Clustering. | Pedro Canelas, Leonardo Martins, Andr Mora, Andre S. Ribeiro, Jos Manuel Fonseca |
| 2016 | SIMULTECH | Generator Platform of Benchmark Time-Lapsed Images Development of Cell Tracking Algorithms: Implementation of New Features Towards a Realistic Simulation of the Cell Spatial and Temporal Organization. | Leonardo Martins, Pedro Canelas, Andr Mora, Andre S. Ribeiro, Jos Manuel Fonseca |
| 2013 | EDUCON | A network and repository for online laboratory, based on ontology. | Hamadou Saliah-Hassane, Ral Cordeiro Correia, Jos Manuel Fonseca |
| 2013 | IJCCI | A PSO/Snake Hybrid Algorithm for Determining Differential Rotation of Coronal Bright Points. | Ehsan Shahamatnia, Ivan Dorotovic, Rita A. Ribeiro, Jos Manuel Fonseca |
| 2012 | EDUCON | Euronet lab a cloud based laboratory environment. | Ral Cordeiro Correia, Jos Manuel Fonseca, Andrew Donellan |
| 2010 | IJCNN | Assessment of benefit vs. risk of drug therapy: The potential for outcome analysis with flexible models. | Paulo J. G. Lisboa, Ana Sofia Fernandes, Jos Manuel Fonseca, Chris Bajdik, Elia Biganzoli |
| 2009 | IWANN | Stratification Methodologies for Neural Networks Models of Survival. | Ana S. Fernandes, Ian H. Jarman, Terence A. Etchells, Jos Manuel Fonseca, Elia Biganzoli, Chris Bajdik, Paulo J. G. Lisboa |
| 2008 | ICMLA | Missing Data Imputation in Longitudinal Cohort Studies: Application of PLANN-ARD in Breast Cancer Survival. | Ana S. Fernandes, Ian H. Jarman, Terence A. Etchells, Jos Manuel Fonseca, Elia Biganzoli, Chris Bajdik, Paulo J. G. Lisboa |
| 2008 | KES | Stratification of Severity of Illness Indices: A Case Study for Breast Cancer Prognosis. | Terence A. Etchells, Ana S. Fernandes, Ian H. Jarman, Jos Manuel Fonseca, Paulo J. G. Lisboa |
| 1997 | EPIA | Multi-Agent Negotiation Algorithms for Resources Cost Estimation: A Case Study. | Jos Manuel Fonseca, Eugnio Oliveira, Adolfo Steiger-Garo |