| 2016 | ECCV | Stochastic Dykstra Algorithms for Metric Learning with Positive Definite Covariance Descriptors. | Tomoki Matsuzawa, Raissa Relator, Jun Sese, Tsuyoshi Kato |
| 2013 | BIBE | Bonferroni correction hides significant motif combinations. | Aika Terada, Jun Sese |
| 2012 | IV | Integrated Visualization of Gene Network and Ontology Applying a Hierarchical Graph Visualization Technique. | Rina Nakazawa, Takayuki Itoh, Jun Sese, Aika Terada |
| 2010 | CIKM | Mining networks with shared items. | Jun Sese, Mio Seki, Mutsumi Fukuzaki |
| 2010 | PAKDD | Finding Itemset-Sharing Patterns in a Large Itemset-Associated Graph. | Mutsumi Fukuzaki, Mio Seki, Hisashi Kashima, Jun Sese |
| 2009 | BIBE | Constructing Yeast Phenotypic Gene Network Using Morphological Inclusion Relations. | Natsumi Abe, Jun Sese |
| 2008 | BIBE | GOMA: Web utility for direct finding of enriched Gene Ontology terms from gene expression profile. | Eriko Mizutani, Jun Sese |
| 2008 | BIBE | Identification of active biological networks and common expression conditions. | Mio Seki, Jun Sese |
| 2008 | PAKDD | Semi-Supervised Local Fisher Discriminant Analysis for Dimensionality Reduction. | Masashi Sugiyama, Tsuyoshi Id, Shinichi Nakajima, Jun Sese |
| 2000 | PODS | Traversing Itemset Lattice with Statistical Metric Pruning. | Shinichi Morishita, Jun Sese |
| 1999 | RoboCup | Linked99. | Junichi Akita, Jun Sese, Tochihide Saka, Masahiro Aono, Tomomi Kawarabayashi, Junji Nishino |