| 2022 | ESORICS | PEA: Practical Private Epistasis Analysis Using MPC. | Kay Hamacher, Tobias Kussel, Thomas Schneider, Oleksandr Tkachenko |
| 2021 | GECCO | Genetic algorithm niching by (Quasi-)infinite memory. | Adrian Worring, Benjamin E. Mayer, Kay Hamacher |
| 2018 | CCS | Large-Scale Privacy-Preserving Statistical Computations for Distributed Genome-Wide Association Studies. | Oleksandr Tkachenko, Christian Weinert, Thomas Schneider, Kay Hamacher |
| 2017 | CANS | Privacy-Preserving Whole-Genome Variant Queries. | Daniel Demmler, Kay Hamacher, Thomas Schneider, Sebastian Stammler |
| 2016 | PSD | Correcting Finite Sampling Issues in Entropy l-diversity. | Sebastian Stammler, Stefan Katzenbeisser, Kay Hamacher |
| 2016 | WABI | StreAM- T_g : Algorithms for Analyzing Coarse Grained RNA Dynamics Based on Markov Models of Connectivity-Graphs. | Sven Jager, Benjamin Schiller, Thorsten Strufe, Kay Hamacher |
| 2014 | GECCO | Stochastic tunneling transformation during selection in genetic algorithm. | Benjamin E. Mayer, Kay Hamacher |
| 2014 | GI | R as an Integration Tool in High Performance Computing - Lessons Learned. | Patrick Boba, Stefan Gries, Kay Hamacher |
| 2011 | FC | Towards Secure Bioinformatics Services (Short Paper). | Martin Franz, Bjrn Deiseroth, Kay Hamacher, Somesh Jha, Stefan Katzenbeisser, Heike Schrder |
| 2011 | NSPW | Public security: simulations need to replace conventional wisdom. | Kay Hamacher, Stefan Katzenbeisser |
| 2011 | PPAM | Is Your Permutation Algorithm Unbiased for n ≠ 2 m ? | Michael Waechter, Kay Hamacher, Franziska Hoffgaard, Sven Widmer, Michael Goesele |
| 2009 | GI | Massively-Parallel Simulation of Biochemical Systems. | Jens Ackermann, Paul Baecher, Thorsten Franzel, Michael Goesele, Kay Hamacher |
| 2009 | GI | Vorwort zum Workshop "Massively parallel computational biology on GPUs". | Kay Hamacher, Michael Goesele |