| 2018 | ISITA | Secure Division Protocol and Applications to Privacy-preserving Chi-squared Tests. | Hiraku Morita, Nuttapong Attrapadung, Satsuya Ohata, Koji Nuida, Shota Yamada, Kana Shimizu, Goichiro Hanaoka, Kiyoshi Asai |
| 2009 | WABI | A Non-parametric Bayesian Approach for Predicting RNA Secondary Structures. | Kengo Sato, Michiaki Hamada, Toutai Mituyama, Kiyoshi Asai, Yasubumi Sakakibara |
| 2007 | APBC | Flow Model of the Protein-protein Interaction Network for Finding Credible Interactions. | Kinya Okada, Kiyoshi Asai, Masanori Arita |
| 2004 | SSPR | A New Variational Framework for Rigid-Body Alignment. | Tsuyoshi Kato, Koji Tsuda, Kentaro Tomii, Kiyoshi Asai |
| 2003 | GECCO | GA-Based Inference of Euler Angles for Single Particle Analysis. | Shusuke Saeki, Kiyoshi Asai, Katsutoshi Takahashi, Yutaka Ueno, Katsunori Isono, Hitoshi Iba |
| 2002 | ECCB | Modeling splicing sites with pairwise correlations. | Masanori Arita, Koji Tsuda, Kiyoshi Asai |
| 2002 | ISMB | Marginalized kernels for biological sequences. | Koji Tsuda, Taishin Kin, Kiyoshi Asai |
| 1997 | ISMB | A New Plug-In Software Architecture Applied for a Portable Molecular Structure Browser. | Yutaka Ueno, Kiyoshi Asai |
| 1994 | ISMB | The Multi-Scale 3D-1D Compatibility Scoring for Inverse Protein Folding Protein. | Kentaro Onizuka, Masayuki Akahoshi, Masato Ishikawa, Kiyoshi Asai |
| 1993 | ISMB | A Multi-Level Description Scheme of Protein Conformation. | Kentaro Onizuka, Stephen T. C. Wong, Masato Ishikawa, Kiyoshi Asai |
| 1993 | ISMB | Hidden Markov Models and Iterative Aligners: Study of Their Equivalence and Possibilities. | Hidetoshi Tanaka, Masato Ishikawa, Kiyoshi Asai, Akihiko Konagaya |
| 1992 | ICASSP | Dividing the distributions of HMM and linear interpolation in speech recognition. | Kiyoshi Asai, Satoru Hayamizu, Ken'ichi Handa |
| 1990 | Interspeech | Voiced-unvoiced classification using weighted distance measures. | Kiyoshi Asai, Shigeru Chiba |
| 1990 | Interspeech | A new method of consonant detection and classification using neural networks. | Shigeru Chiba, Kiyoshi Asai |