| 2025 | QCE | Quantum Machine Learning for Minimal Omics Datasets with Large Feature Space Using Embeddings and Feature Selection Techniques. | Mustafa Emre Sahin, Matthew Madgwick, James Strudwick, Vivek Sehra, Oscar Wallis, Hamed Javidi, Anna Paola Carrieri, Laxmi Parida, Lara Jehi, Stefano Mensa, Filippo Utro |
| 2024 | QCE | Hybrid Quantum-Classical Graph Neural Networks for Tumor Classification in Digital Pathology. | Anupama Ray, Dhiraj Madan, Srushti Patil, Pushpak Pati, Maria Anna Rapsomaniki, Aviwe Kohlakala, Thembelihle Rose Dlamini, Stephanie Julia Muller, Kahn Rhrissorrakrai, Filippo Utro, Laxmi Parida |
| 2024 | RECOMB | MaSk-LMM: A Matrix Sketching Framework for Linear Mixed Models in Association Studies. | Myson C. Burch, Aritra Bose, Gregory Dexter, Laxmi Parida, Petros Drineas |
| 2022 | AMIA | Epidemiological topology data analysis links severe COVID-19 to RAAS and hyperlipidemia associated metabolic syndrome conditions. | Daniel E. Platt, Aritra Bose, Chaya Levovitz, Kahn Rhrissorrakrai, Laxmi Parida |
| 2021 | AMIA | Impact of Clinical and Genomic Factors on COVID-19 Disease Severity. | Sanjoy Dey, Aritra Bose, Subrata Saha, Prithwish Chakraborty, Mohamed F. Ghalwash, Filippo Utro, Aldo Guzmn-Senz, Kenney Ng, Jianying Hu, Laxmi Parida, Daby Sow |
| 2018 | WABI | Essential Simplices in Persistent Homology and Subtle Admixture Detection. | Saugata Basu, Filippo Utro, Laxmi Parida |
| 2017 | PSB | MUSE: A Multi-locus Sampling-based Epistasis Algorithm for Quantitative Genetic Trait Prediction. | Dan He, Laxmi Parida |
| 2015 | ICDCIT | Host Trait Prediction of Metagenomic Data for Topology-Based Visualization. | Laxmi Parida, Niina Haiminen, David Haws, Jan Suchodolski |
| 2015 | RECOMB | Topological Signatures for Population Admixture. | Laxmi Parida, Filippo Utro, Deniz Yrkoglu, Anna Paola Carrieri, David Kuhn, Saugata Basu |
| 2014 | SDM | Transductive HSIC Lasso. | Dan He, Irina Rish, Laxmi Parida |
| 2014 | WABI | Best-Fit in Linear Time for Non-generative Population Simulation - (Extended Abstract). | Niina Haiminen, Claude Lebreton, Laxmi Parida |
| 2014 | WABI | Entropic Profiles, Maximal Motifs and the Discovery of Significant Repetitions in Genomic Sequences. | Laxmi Parida, Cinzia Pizzi, Simona E. Rombo |
| 2013 | CiE | Using Random Graphs in Population Genomics. | Laxmi Parida |
| 2013 | RECOMB | IPED: Inheritance Path Based Pedigree Reconstruction Algorithm Using Genotype Data. | Dan He, Zhanyong Wang, Buhm Han, Laxmi Parida, Eleazar Eskin |
| 2012 | SPIRE | Characterization and Extraction of Irredundant Tandem Motifs. | Laxmi Parida, Cinzia Pizzi, Simona E. Rombo |
| 2011 | KDD | Experiences with mining temporal event sequences from electronic medical records: initial successes and some challenges. | Debprakash Patnaik, Patrick Butler, Naren Ramakrishnan, Laxmi Parida, Benjamin J. Keller, David A. Hanauer |
| 2007 | APBC | Subtle Motif Discovery for Detection of DNA Regulatory Sites. | Matteo Comin, Laxmi Parida |
| 2006 | ISMB | Constructing Near-Perfect Phylogenies with multiple homoplasy events. | Ravi Vijaya Satya, Amar Mukherjee, Gabriela Alexe, Laxmi Parida, Gyan Bhanot |
| 2006 | RECOMB | A PQ Framework for Reconstructions of Common Ancestors and Phylogeny. | Laxmi Parida |
| 2006 | RECOMB | Inferring Common Origins from mtDNA. | Ajay K. Royyuru, Gabriela Alexe, Daniel E. Platt, Ravi Vijaya Satya, Laxmi Parida, Saharon Rosset, Gyan Bhanot |
| 2006 | WABI | Gapped Permutation Patterns for Comparative Genomics. | Laxmi Parida |
| 2005 | AAAI | Redescription Mining: Structure Theory and Algorithms. | Laxmi Parida, Naren Ramakrishnan |
| 2005 | APBC | Protein folding trajectory analysis using patterned clusters. | J. Feng, Laxmi Parida, Ruhong Zhou |
| 2005 | CPM | Using PQ Trees for Comparative Genomics. | Gad M. Landau, Laxmi Parida, Oren Weimann |
| 2005 | DCC | Off-Line Compression by Extensible Motifs. | Alberto Apostolico, Matteo Comin, Laxmi Parida |
| 2005 | ISMB | Conservative extraction of over-represented extensible motifs. | Alberto Apostolico, Matteo Comin, Laxmi Parida |
| 2004 | DCC | Motifs in Ziv-Lempel-Welch Clef. | Alberto Apostolico, Matteo Comin, Laxmi Parida |
| 2003 | DCC | Compression and the Wheel of Fortune. | Alberto Apostolico, Laxmi Parida |
| 2003 | WABI | A Combinatorial Approach to Automatic Discovery of Cluster-Patterns. | Revital Eres, Gad M. Landau, Laxmi Parida |
| 2001 | CPM | An Output-Sensitive Flexible Pattern Discovery Algorithm. | Laxmi Parida, Isidore Rigoutsos, Daniel E. Platt |
| 2000 | CPM | Some Results on Flexible-Pattern Discovery. | Laxmi Parida |
| 2000 | SODA | Pattern discovery on character sets and real-valued data: linear bound on irredundant motifs and an efficient polynomial time algorithm. | Laxmi Parida, Isidore Rigoutsos, Aris Floratos, Daniel E. Platt, Yuan Gao |
| 1999 | ISMB | Building Dictionaries of 1D and 3D Motifs by Mining the Unaligned 1D Sequences of 17 Archaeal and Bacterial Genomes. | Isidore Rigoutsos, Yuan Gao, Aris Floratos, Laxmi Parida |
| 1999 | RECOMB | Sequence homology detection through large scale pattern discovery. | Aris Floratos, Isidore Rigoutsos, Laxmi Parida, Gustavo Stolovitzky, Yuan Gao |
| 1998 | RECOMB | Partitioning | Laxmi Parida, Bud Mishra |
| 1997 | RECOMB | Towards constructing physical maps by optical mapping (extended abstract): an effective, simple, combinatorial approach. | S. Muthukrishnan, Laxmi Parida |
| 1996 | CVPR | Visual Organization for Figure/Ground Separation. | Davi Geiger, Krishnan Kumaran, Laxmi Parida |