| 2025 | WABI | Average-Tree Phylogenetic Diversity of Networks. | Leo van Iersel, Mark Jones, Jannik Schestag, Cline Scornavacca, Mathias Weller |
| 2023 | WABI | Making a Network Orchard by Adding Leaves. | Leo van Iersel, Mark Jones, Esther Julien, Yukihiro Murakami |
| 2022 | ESA | Embedding Phylogenetic Trees in Networks of Low Treewidth. | Leo van Iersel, Mark Jones, Mathias Weller |
| 2022 | WABI | Reconstructing Phylogenetic Networks via Cherry Picking and Machine Learning. | Giulia Bernardini, Leo van Iersel, Esther Julien, Leen Stougie |
| 2016 | WAOA | A priori TSP in the Scenario Model. | Martijn van Ee, Leo van Iersel, Teun Janssen, Ren Sitters |
| 2014 | RECOMB | WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads. | Murray Patterson, Tobias Marschall, Nadia Pisanti, Leo van Iersel, Leen Stougie, Gunnar W. Klau, Alexander Schnhuth |
| 2014 | WG | Kernelizations for the Hybridization Number Problem on Multiple Nonbinary Trees. | Leo van Iersel, Steven Kelk |
| 2012 | WABI | A Practical Approximation Algorithm for Solving Massive Instances of Hybridization Number. | Leo van Iersel, Steven Kelk, Nela Lekic, Cline Scornavacca |
| 2010 | ESA | All Ternary Permutation Constraint Satisfaction Problems Parameterized above Average Have Kernels with Quadratic Numbers of Variables. | Gregory Z. Gutin, Leo van Iersel, Matthias Mnich, Anders Yeo |
| 2008 | ISAAC | Constructing the Simplest Possible Phylogenetic Network from Triplets. | Leo van Iersel, Steven Kelk |
| 2008 | RECOMB | Constructing Level-2 Phylogenetic Networks from Triplets. | Leo van Iersel, Judith Keijsper, Steven Kelk, Leen Stougie, Ferry Hagen, Teun Boekhout |
| 2006 | WABI | Beaches of Islands of Tractability: Algorithms for Parsimony and Minimum Perfect Phylogeny Haplotyping Problems. | Leo van Iersel, Judith Keijsper, Steven Kelk, Leen Stougie |
| 2005 | WABI | On the Complexity of Several Haplotyping Problems. | Rudi Cilibrasi, Leo van Iersel, Steven Kelk, John Tromp |