| 2020 | WABI | An Interpretable Classification Method for Predicting Drug Resistance in M. Tuberculosis. | Hooman Zabeti, Nick C. Dexter, Amir Hosein Safari, Nafiseh Sedaghat, Maxwell W. Libbrecht, Leonid Chindelevitch |
| 2018 | RECOMB | A Cubic Algorithm for the Generalized Rank Median of Three Genomes. | Leonid Chindelevitch, Joao Meidanis |
| 2018 | WABI | PRINCE: Accurate Approximation of the Copy Number of Tandem Repeats. | Mehrdad Mansouri, Julian Booth, Margaryta Vityaz, Cdric Chauve, Leonid Chindelevitch |
| 2018 | WABI | A Duality-Based Method for Identifying Elemental Balance Violations in Metabolic Network Models. | Hooman Zabeti, Tamon Stephen, Bonnie Berger, Leonid Chindelevitch |
| 2017 | RECOMB | On the Rank-Distance Median of 3 Permutations. | Leonid Chindelevitch, Joo Meidanis |
| 2011 | RECOMB | Metabolic Network Analysis Demystified. | Leonid Chindelevitch, Aviv Regev, Bonnie Berger |
| 2011 | RECOMB | Causal Reasoning on Biological Networks: Interpreting Transcriptional Changes - (Extended Abstract). | Leonid Chindelevitch, Daniel Ziemek, Ahmed Enayetallah, Ranjit Randhawa, Ben Sidders, Christoph Brockel, Enoch S. Huang |
| 2010 | PSB | Local Optimization for Global Alignment of Protein Interaction Networks. | Leonid Chindelevitch, Chung-Shou Liao, Bonnie Berger |
| 2008 | ICML | Inverting the Viterbi algorithm: an abstract framework for structure design. | Michael Schnall-Levin, Leonid Chindelevitch, Bonnie Berger |