| 2021 | DCC | On Universal Codes for Integers: Wallace Tree, Elias Omega and Beyond. | Lloyd Allison, Arun Siddharth Konagurthu, Daniel F. Schmidt |
| 2018 | DCC | The Bits Between Proteins. | Dinithi Sumanaweera, Lloyd Allison, Arun Siddharth Konagurthu |
| 2017 | DCC | Statistical Compression of Protein Folding Patterns for Inference of Recurrent Substructural Themes. | Ramanan Subramanian, Lloyd Allison, Peter J. Stuckey, Maria Garcia de la Banda, David Abramson, Arthur M. Lesk, Arun Siddharth Konagurthu |
| 2014 | ICDM | A Statistically Efficient and Scalable Method for Log-Linear Analysis of High-Dimensional Data. | Franois Petitjean, Lloyd Allison, Geoffrey I. Webb |
| 2014 | RECOMB | On Sufficient Statistics of Least-Squares Superposition of Vector Sets. | Arun Siddharth Konagurthu, Parthan Kasarapu, Lloyd Allison, James H. Collier, Arthur M. Lesk |
| 2013 | ICDM | Statistical Inference of Protein "LEGO Bricks". | Arun Siddharth Konagurthu, Lloyd Allison, David Abramson, Peter J. Stuckey, Arthur M. Lesk |
| 2010 | WABI | Design of an Efficient Out-of-Core Read Alignment Algorithm. | Arun Siddharth Konagurthu, Lloyd Allison, Thomas C. Conway, Bryan Beresford-Smith, Justin Zobel |
| 2009 | PAKDD | Computing Substitution Matrices for Genomic Comparative Analysis. | Minh Duc Cao, Trevor I. Dix, Lloyd Allison |
| 2007 | DCC | A Simple Statistical Algorithm for Biological Sequence Compression. | Minh Duc Cao, Trevor I. Dix, Lloyd Allison, Chris Mears |
| 2003 | IDEAL | Flexible Decision Trees in a General Data-Mining Environment. | Joshua W. Comley, Lloyd Allison, Leigh J. Fitzgibbon |
| 2003 | IDEAL | Probability Model Type Sufficiency. | Leigh J. Fitzgibbon, Lloyd Allison, Joshua W. Comley |
| 2002 | ICML | Univariate Polynomial Inference by Monte Carlo Message Length Approximation. | Leigh J. Fitzgibbon, David L. Dowe, Lloyd Allison |
| 2002 | PRICAI | Change-Point Estimation Using New Minimum Message Length Approximations. | Leigh J. Fitzgibbon, David L. Dowe, Lloyd Allison |
| 2000 | ALT | Minimum Message Length Grouping of Ordered Data. | Leigh J. Fitzgibbon, Lloyd Allison, David L. Dowe |
| 1998 | DCC | Minimum Message Length Hidden Markov Modelling. | Timothy Edgoose, Lloyd Allison |
| 1998 | ISMB | Compression of Strings with Approximate Repeats. | Lloyd Allison, Timothy Edgoose, Trevor I. Dix |
| 1998 | PAKDD | The Hunter and the Hunted - Modelling the Relationship Between Web Pages and Search Engines. | David L. Dowe, Lloyd Allison, Glen Pringle |