| 2014 | ICCS | FPGA-based Acceleration of Detecting Statistical Epistasis in GWAS. | Lars Wienbrandt, Jan Christian Kssens, Jorge Gonzlez-Domnguez, Bertil Schmidt, David Ellinghaus, Manfred Schimmler |
| 2014 | ICPADS | An efficient implementation of PBKDF2 with RIPEMD-160 on multiple FPGAs. | Ayman Abbas, Rian Voss, Lars Wienbrandt, Manfred Schimmler |
| 2012 | ICPADS | Dictionary Attack on TrueCrypt with RIVYERA S3-5000. | Ayman Abbas, Claas Anders Rathje, Lars Wienbrandt, Manfred Schimmler |
| 2011 | ACC | MPI Performance Analysis of Amazon EC2 Cloud Services for High Performance Computing. | Florian Schatz, Sven Koschnicke, Niklas Paulsen, Christoph Starke, Manfred Schimmler |
| 2009 | ICCS | A Massively Parallel Architecture for Bioinformatics. | Gerd Pfeiffer, Stefan Baumgart, Jan Schrder, Manfred Schimmler |
| 2008 | FPL | Enhancing COPACOBANA for advanced applications in cryptography and cryptanalysis. | Tim Gneysu, Christof Paar, Gerd Pfeiffer, Manfred Schimmler |
| 2006 | CHES | Breaking Ciphers with COPACOBANA - A Cost-Optimized Parallel Code Breaker. | Sandeep S. Kumar, Christof Paar, Jan Pelzl, Gerd Pfeiffer, Manfred Schimmler |
| 2006 | FCCM | COPACOBANA A Cost-Optimized Special-Purpose Hardware for Code-Breaking. | Sandeep S. Kumar, Christof Paar, Jan Pelzl, Gerd Pfeiffer, Manfred Schimmler |
| 2006 | IKE | PLUG: An Agent Based Prototype Validation of CAD-Constructions. | Stefan Baumgart, Begona Toledo, Karin Spors, Manfred Schimmler |
| 2005 | FPL | Efficient Hardware Architectures for Modular Multiplication on FPGAs. | David Narh Amanor, Viktor Bunimov, Christof Paar, Jan Pelzl, Manfred Schimmler |
| 2003 | EuroPar | Efficient Parallel Multiplication Algorithm for Large Integres. | Viktor Bunimov, Manfred Schimmler |
| 2003 | PDPTA | Design of a Bit-Serial Floating Point Unit for a Fine Grained Parallel Processor Array. | Manfred Schimmler, Bertil Schmidt, Hans-Werner Lang |
| 2001 | EuroPar | Scanning Biosequence Databases on a Hybrid Parallel Architecture. | Bertil Schmidt, Heiko Schrder, Manfred Schimmler |
| 2001 | PACT | Protein Sequence Comparison on the Instruction Systolic Array. | Bertil Schmidt, Heiko Schrder, Manfred Schimmler |
| 2000 | EuroPar | Architectures and Algorithms for Multimedia Applications. | Manfred Schimmler |
| 1999 | EuroPar | A Parallel Accelerator Architecture for Multimedia Video Compression. | Bertil Schmidt, Manfred Schimmler |
| 1998 | EuroPar | Long Operand Arithmetic on Instruction Systolic Computer Architectures and Its Application in RSA Cryptography. | Bertil Schmidt, Manfred Schimmler, Heiko Schrder |
| 1997 | EuroPar | Morphological Hough Transform on the Instruction Systolic Array. | Bertil Schmidt, Manfred Schimmler, Heiko Schrder |
| 1988 | WG | A Simple Systolic Method to Find all Bridges of an Undirected Graph. | Manfred Schimmler, Heiko Schrder |
| 1983 | ICALP | A Fast Sorting Algorithm for VLSI. | Hans-Werner Lang, Manfred Schimmler, Hartmut Schmeck, Heiko Schrder |