| 2020 | AIED | What Happens When Gamification Ends? | Miguel Garca Iruela, Manuel J. Fonseca, Raquel Hijn-Neira, Teresa Chambel |
| 2019 | AIED | Analysis of Gamification Elements. A Case Study in a Computer Science Course. | Miguel Garca Iruela, Manuel J. Fonseca, Raquel Hijn-Neira, Teresa Chambel |
| 2018 | ICMI | EyeLinks: A Gaze-Only Click Alternative for Heterogeneous Clickables. | Pedro Figueiredo, Manuel J. Fonseca |
| 2017 | VLDB | Umedicine: A System for Clinical Practice Support and Data Analysis. | Nuno F. Lages, Bernardo Caetano, Manuel J. Fonseca, Joo D. Pereira, Helena Galhardas, Rui Farinha |
| 2014 | RecSys | A User-centered Music Recommendation Approach for Daily Activities. | Ricardo Dias, Manuel J. Fonseca, Ricardo Cunha |
| 2013 | CBMI | Clip art retrieval combining raster and vector methods. | Pedro Martins, Rui Jesus, Manuel J. Fonseca, Nuno Correia |
| 2013 | ICTAI | Improving Music Recommendation in Session-Based Collaborative Filtering by Using Temporal Context. | Ricardo Dias, Manuel J. Fonseca |
| 2012 | AVI | Interactive exploration of music listening histories. | Ricardo Dias, Manuel J. Fonseca, Daniel Gonalves |
| 2012 | AVI | Improving blog exploration through interactive visualization. | Nelson Marques, Ricardo Dias, Manuel J. Fonseca |
| 2012 | ICTAI | Combining Color and Topology for Partial Matching. | Dal F. D. dos Santos, Ilmrio Reis da Silva, Denise Guliato, Manuel J. Fonseca |
| 2012 | IUI | Music listening history explorer: an alternative approach for browsing music listening history habits. | Ricardo Dias, Manuel J. Fonseca, Daniel Gonalves |
| 2011 | IC3K | Automatic Estimation of the LSA Dimension. | Jorge Fernandes, Andreia Artfice, Manuel J. Fonseca |
| 2008 | AVI | Agrafo: a visual interface for grouping and browsing digital photos. | Joo Mota, Manuel J. Fonseca, Daniel Gonalves, Joaquim A. Jorge |
| 2004 | AVI | Sketch-based retrieval of ClipArt drawings. | Manuel J. Fonseca, Bruno Barroso, Pedro Ribeiro, Joaquim A. Jorge |
| 2003 | DASFAA | Indexing High-Dimensional Data for Content-Based Retrieval in Large Databases. | Manuel J. Fonseca, Joaquim A. Jorge |
| 2001 | WSCG | Modelling Solids and Surfaces with Sketches - an Empirical Evaluation. | Manuel Oliveira, Vladimiro Colao, Joaquim A. Jorge, Manuel J. Fonseca |