| 2011 | ICPP | Bloom Filter Performance on Graphics Engines. | Lin Ma, Roger D. Chamberlain, Jeremy D. Buhler, Mark A. Franklin |
| 2010 | SAC | Application-guided tool development for architecturally diverse computation. | Roger D. Chamberlain, Jeremy Buhler, Mark A. Franklin, James H. Buckley |
| 2007 | PADS | A Federated Simulation Environment for Hybrid Systems. | Saurabh Gayen, Eric J. Tyson, Mark A. Franklin, Roger D. Chamberlain |
| 2007 | SC | Application development on hybrid systems. | Roger D. Chamberlain, Mark A. Franklin, Eric J. Tyson, Jeremy Buhler, Saurabh Gayen, Patrick Crowley, James H. Buckley |
| 2006 | ICS | Accelerator design for protein sequence HMM search. | Rahul P. Maddimsetty, Jeremy Buhler, Roger D. Chamberlain, Mark A. Franklin, Brandon Harris |
| 2004 | ICCD | An Architecture for Fast Processing of Large Unstructured Data Sets. | Mark A. Franklin, Roger D. Chamberlain, Michael Henrichs, E. F. Berkley Shands, Jason White |
| 2004 | MASCOTS | SimplePipe: A Simulation Tool for Task Allocation and Design of Processor Pipelines with Application to Network Processors. | Mark A. Franklin, Vinayak Joshi |
| 2001 | ISPASS | Locality-aware predictive scheduling of network processors. | Tilman Wolf, Mark A. Franklin |
| 2000 | ISPASS | CommBench-a telecommunications benchmark for network processors. | Tilman Wolf, Mark A. Franklin |
| 1999 | MASCOTS | Fair Scheduling in an Optical Interconnection Network. | Ch'ng Shi Baw, Roger D. Chamberlain, Mark A. Franklin |
| 1994 | ICPP | Speculative Computation: Overcoming Communication Delays. | Vasudha Govindan, Mark A. Franklin |
| 1993 | HPDC | Distributed Computing Systems and Checkpointing. | Kenneth F. Wong, Mark A. Franklin |
| 1993 | MICRO | Clocked and asynchronous instruction pipelines. | Mark A. Franklin, Tienyo Pan |
| 1990 | ICCD | Task assignment by parallel simulated annealing. | Ellen E. Witte, Roger D. Chamberlain, Mark A. Franklin |
| 1990 | ICPP | Parallel Simulated Annealing Using Speculative Computation. | Ellen E. Witte, Roger D. Chamberlain, Mark A. Franklin |
| 1988 | ICCAD | Discrete-event simulation on hypercube architectures. | Roger D. Chamberlain, Mark A. Franklin |
| 1988 | ICCD | Simulated annealing on a multiprocessor. | Roger D. Chamberlain, Mark N. Edelman, Mark A. Franklin, Ellen E. Witte |
| 1988 | ICCD | Classical fault analysis for MOS VLSI circuits. | Brian L. Shing, Mark A. Franklin |
| 1987 | ISCA | Performance Analysis and Design of a Logic Simulation Machine. | Kenneth F. Wong, Mark A. Franklin |
| 1986 | DAC | Statistics on logic simulation. | Kenneth F. Wong, Mark A. Franklin, Roger D. Chamberlain, Brian L. Shing |
| 1986 | ICPP | On Designing Interconnection Networks for Multiprocessors. | Mark A. Franklin, Sanjay Dhar |
| 1983 | ICPP | Timing Control of VLSI Based NlogN and Crossbar Networks. | Sanjay Dhar, Mark A. Franklin, Donald F. Wann |
| 1982 | ISCA | Asynchronous and clocked control structures for VLSI based interconnection networks. | Mark A. Franklin, Donald F. Wann |
| 1979 | ISCA | Design Issues in the Development of a Modular Mutliprocessor Communications Network. | Mark A. Franklin, S. A. Kahn, Mishell J. Stucki |