| 2023 | IJCNN | Using Connectome Features to Constrain Echo State Networks. | Jacob Morra, Mark Daley |
| 2023 | SMC | Multifunctionality in a Connectome-Based Reservoir Computer. | Jacob Morra, Andrew Flynn, Andreas Amann, Mark Daley |
| 2022 | IJCNN | Imposing Connectome-Derived Topology on an Echo State Network. | Jacob Morra, Mark Daley |
| 2020 | SMC | A Fully-Connected Neural Network Derived from an Electron Microscopy Map of Olfactory Neurons in Drosophila Melanogaster for Odor Classification. | Jacob Morra, Mark Daley |
| 2019 | CEC | User and Task Identification of Smartwatch Data with an Ensemble of Nonlinear Symbolic Models. | James Alexander Hughes, Joseph Alexander Brown, Adil Mehmood Khan, Asad Masood Khattak, Mark Daley |
| 2019 | CEC | Generating Nonlinear Models of Functional Connectivity from Functional Magnetic Resonance Imaging Data with Genetic Programming. | James Alexander Hughes, Mark Daley |
| 2019 | GECCO | Novelty search for deep reinforcement learning policy network weights by action sequence edit metric distance. | Ethan C. Jackson, Mark Daley |
| 2018 | CIBCB | Analysis of symbolic models of biometrie data and their use for action and user identification. | James Alexander Hughes, Joseph Alexander Brown, Adil Mehmood Khan, Asad Masood Khattak, Mark Daley |
| 2018 | CIBCB | On the generalizability of linear and non-linear region of interest-based multivariate regression models for fMRI data. | Ethan C. Jackson, James Alexander Hughes, Mark Daley |
| 2017 | CIBCB | Modelling intracranial pressure with noninvasive physiological measures. | James Alexander Hughes, Ethan C. Jackson, Mark Daley |
| 2017 | CIBCB | An algebraic generalization for graph and tensor-based neural networks. | Ethan C. Jackson, James Alexander Hughes, Mark Daley, Michael Winter |
| 2017 | GECCO | Searching for nonlinear relationships in fMRI data with symbolic regression. | James Alexander Hughes, Mark Daley |
| 2016 | GECCO | Finding Nonlinear Relationships in fMRI Time Series with Symbolic Regression. | James Alexander Hughes, Mark Daley |
| 2014 | UC | Simulating Cancer Growth Using Cellular Automata to Detect Combination Drug Targets. | Jenna L. Butler, Frances Mackay, Colin Denniston, Mark Daley |
| 2011 | SOFSEM | One-Reversal Counter Machines and Multihead Automata: Revisited. | Ehsan Chiniforooshan, Mark Daley, Oscar H. Ibarra, Lila Kari, Shinnosuke Seki |
| 2008 | CiE | On the Processing Power of Protozoa. | Mark Daley |
| 2008 | IV | No Going Back: An Interactive Visualization Application for Trailblazing on the Web. | Christopher Power, Ian McQuillan, Helen Petrie, Peter Kennaugh, Mark Daley, Geoff Wozniak |
| 2008 | SOFSEM | A Useful Bounded Resource Functional Language. | Michael J. Burrell, James H. Andrews, Mark Daley |
| 2006 | CHI | Voronoi diagrams, vectors and the visually impaired. | Christopher Power, Dawn Gill, Mark Daley |
| 2006 | COCOON | Iterated TGR Languages: Membership Problem and Effective Closure Properties. | Ian McQuillan, Kai Salomaa, Mark Daley |
| 2005 | DNA | On Computational Properties of Template-Guided DNA Recombination. | Mark Daley, Ian McQuillan |
| 2004 | DLT | On Codes Defined by Bio-Operations. | Mark Daley, Michael Domaratzki |
| 2002 | DLT | Some Properties of Ciliate Bio-operations. | Mark Daley, Lila Kari |
| 1999 | SPIRE | Circular Contextual Insertions/Deletions with Applications to Biomolecular Computation. | Mark Daley, Lila Kari, Greg Gloor, Rani Siromoney |