Mark Gerstein
Publication record assembled from the DBLP archive of ranked conferences.
Papers indexed
17
Venues
11
Active years
1994–2025
Best venue rank
A*
Where they publish
Papers
17 indexed papers, newest first.
| Year | Venue | Title | Authors |
|---|---|---|---|
| 2025 | EMNLP | Med-PRM: Medical Reasoning Models with Stepwise, Guideline-verified Process Rewards. | Jaehoon Yun, Jiwoong Sohn, Jungwoo Park, Hyunjae Kim, Xiangru Tang, Daniel Shao, Yonghoe Koo, Minhyeok Ko, Qingyu Chen, Mark Gerstein, Michael Moor, Jaewoo Kang |
| 2025 | ICLR | Enhancing the Scalability and Applicability of Kohn-Sham Hamiltonians for Molecular Systems. | Yunyang Li, Zaishuo Xia, Lin Huang, Xinran Wei, Samuel Harshe, Han Yang, Erpai Luo, Zun Wang, Jia Zhang, Chang Liu, Bin Shao, Mark Gerstein |
| 2025 | ICLR | ChemAgent: Self-updating Memories in Large Language Models Improves Chemical Reasoning. | Xiangru Tang, Tianyu Hu, Muyang Ye, Yanjun Shao, Xunjian Yin, Siru Ouyang, Wangchunshu Zhou, Pan Lu, Zhuosheng Zhang, Yilun Zhao, Arman Cohan, Mark Gerstein |
| 2024 | ACL | MedAgents: Large Language Models as Collaborators for Zero-shot Medical Reasoning. | Xiangru Tang, Anni Zou, Zhuosheng Zhang, Ziming Li, Yilun Zhao, Xingyao Zhang, Arman Cohan, Mark Gerstein |
| 2024 | EMNLP | MIMIR: A Customizable Agent Tuning Platform for Enhanced Scientific Applications. | Xiangru Tang, Chunyuan Deng, Hanming Wang, Haoran Wang, Yilun Zhao, Wenqi Shi, May Fung, Wangchunshu Zhou, Jiannan Cao, Heng Ji, Arman Cohan, Mark Gerstein |
| 2024 | ICLR | ToolLLM: Facilitating Large Language Models to Master 16000+ Real-world APIs. | Yujia Qin, Shihao Liang, Yining Ye, Kunlun Zhu, Lan Yan, Yaxi Lu, Yankai Lin, Xin Cong, Xiangru Tang, Bill Qian, Sihan Zhao, Lauren Hong, Runchu Tian, Ruobing Xie, Jie Zhou, Mark Gerstein, Dahai Li, Zhiyuan Liu, Maosong Sun |
| 2024 | NAACL | Investigating Data Contamination in Modern Benchmarks for Large Language Models. | Chunyuan Deng, Yilun Zhao, Xiangru Tang, Mark Gerstein, Arman Cohan |
| 2024 | NAACL | Struc-Bench: Are Large Language Models Good at Generating Complex Structured Tabular Data? | Xiangru Tang, Yiming Zong, Jason Phang, Yilun Zhao, Wangchunshu Zhou, Arman Cohan, Mark Gerstein |
| 2014 | AISTATS | Interpretable Sparse High-Order Boltzmann Machines. | Martin Renqiang Min, Xia Ning, Chao Cheng, Mark Gerstein |
| 2006 | CISS | Design Issues in Implementing a Portable Sample Tracking and Analysis Research Support (STARS) System for PCR Based Microarray Research. | Frederick G. Sayward, Jin Yang, Kenneth Nelson, Ghia Euskirchen, Alexander E. Urban, Paul Bertone, John Rinn, Sherman Weissman, Mark Gerstein, Michael Snyder, Perry L. Miller |
| 2005 | IJCNN | Inferring protein-protein interactions using interaction network topologies. | Alberto Paccanaro, Valery Trifonov, Haiyuan Yu, Mark Gerstein |
| 2005 | ISMB | YeastHub: a semantic web use case for integrating data in the life sciences domain. | Kei-Hoi Cheung, Kevin Y. Yip, Andrew K. Smith, Remko de Knikker, Andy Masiar, Mark Gerstein |
| 2002 | AMIA | YMD: a microarray database for large-scale gene expression analysis. | Kei-Hoi Cheung, Kevin P. White, Janet Hager, Mark Gerstein, Valerie Reinke, Kenneth Nelson, Peter Masiar, Ranjana Srivastava, Yuli Li, Ju Li, Hongyu Zhao, Jinming Li, David B. Allison, Michael Snyder, Perry L. Miller, Kenneth R. Williams |
| 2002 | WABI | Fast Optimal Genome Tiling with Applications to Microarray Design and Homology Search. | Piotr Berman, Paul Bertone, Bhaskar DasGupta, Mark Gerstein, Ming-Yang Kao, Michael Snyder |
| 2001 | BIBE | An XML Application For Genomic Data Interoperation. | Kei-Hoi Cheung, Yang Liu, Anuj Kumar, Michael Snyder, Mark Gerstein, Perry L. Miller |
| 1996 | ISMB | Using Iterative Dynamic Programming to Obtain Accurate Pairwise and Multiple Alignments of Protein Structures. | Mark Gerstein, Michael Levitt |
| 1994 | ISMB | Finding an Average Core Structure: Application to the Globins. | Russ B. Altman, Mark Gerstein |