| 2026 | WG | High Beer Index Implies Big Hollow Triangles. | Arun Kumar Das, Vt Jelnek, Jan Kyncl, Martin Pergel, Felix Schrder, Peter Stumpf, Pavel Valtr |
| 2025 | GD | The Bend Number of Cocomparability Graphs. | Todor Antic, Vt Jelnek, Martin Pergel, Felix Schrder, Peter Stumpf, Pavel Valtr |
| 2020 | WG | On Flips in Planar Matchings. | Marcel Milich, Torsten Mtze, Martin Pergel |
| 2016 | WG | On Edge Intersection Graphs of Paths with 2 Bends. | Martin Pergel, Pawel Rzazewski |
| 2012 | ICEC | Towards a Brewery Educational Game: Would Existence of a Game Goal Improve Learning? | Cyril Brom, Edita Bromov, Martin Pergel |
| 2012 | ISAAC | Beyond Homothetic Polygons: Recognition and Maximum Clique. | Konstanty Junosza-Szaniawski, Jan Kratochvl, Martin Pergel, Pawel Rzazewski |
| 2008 | ESA | The Complexity of Sorting with Networks of Stacks and Queues. | Stefan Felsner, Martin Pergel |
| 2007 | COCOON | Geometric Intersection Graphs: Do Short Cycles Help? | Jan Kratochvl, Martin Pergel |
| 2007 | GD | Clustered Planarity: Small Clusters in Eulerian Graphs. | Eva Jelnkov, Jan Kra, Jan Kratochvl, Martin Pergel, Ondrej Such, Toms Vyskocil |
| 2007 | WG | Recognition of Polygon-Circle Graphs and Graphs of Interval Filaments Is NP-Complete. | Martin Pergel |
| 2003 | GD | Two Results on Intersection Graphs of Polygons. | Jan Kratochvl, Martin Pergel |