| 2014 | ICDSE | A nature-inspired hybrid Fuzzy C-means algorithm for better clustering of biological data sets. | T. A. Arunanand, K. A. Abdul Nazeer, Mathew J. Palakal, Meeta Pradhan |
| 2010 | SAC | OncoViz: a user-centric mining and visualization tool for cancer-related literature. | Zi Ning, Ji Soo Yi, Mathew J. Palakal, Anna M. McDaniel |
| 2010 | SAC | A framework for cross-disciplinary hypothesis generation. | Yue W. Webster, Ranga Chandra Gudivada, Ernst R. Dow, Jacob Koehler, Mathew J. Palakal |
| 2009 | HCI | Educational Sound Symbols for the Visually Impaired. | Steven Mannheimer, Mexhid Ferati, Davide Bolchini, Mathew J. Palakal |
| 2009 | SEKE | Comparison of Some Single-agent and Multi-agent Information Filtering Systems on a Benchmark Text Data Set. | Snehasis Mukhopadhyay, Shengquan Peng, Rajeev R. Raje, Mathew J. Palakal, Javed Mostafa |
| 2008 | SAC | Computational approach to biological validation of protein-protein interactions discovered using literature mining. | Anna Antony, Srilaxmi Basetty, Shielly Hartanto, Mathew J. Palakal |
| 2008 | SAC | Special track on Bioinformatics: editorial message. | Mathew J. Palakal, William Perrizo, Kanagasabai Rajaraman |
| 2007 | SAC | On-the-fly data integration models for biological databases. | Pavithra G. Naidu, Mathew J. Palakal, Shielly Hartanto |
| 2006 | SAC | Editorial message: special track on bioinformatics. | Mathew J. Palakal, William Perrizo |
| 2005 | SAC | Generating association graphs of non-cooccurring text objects using transitive methods. | Niranjan Jayadevaprakash, Snehasis Mukhopadhyay, Mathew J. Palakal |
| 2005 | SAC | Editorial message: special track on bioinformatics. | Mathew J. Palakal, Sven Rahmann, Birong Liao |
| 2004 | FlAIRS | Cellular Automata Approach to Aircraft Corrosion Pit Growth. | Ramana Pidaparti, Mathew J. Palakal, Long Fong |
| 2004 | SAC | Editorial message: special track on bioinformatics. | Warren T. Jones, Mathew J. Palakal, Jake Yue Chen |
| 2004 | SAC | BioMap: toward the development of a knowledge base of biomedical literature. | Kamal Kumar, Mathew J. Palakal, Snehasis Mukhopadhyay, Matthew J. Stephens, Huian Li |
| 2003 | SAC | Bioinformatics Track Editorial. | Warren T. Jones, Mathew J. Palakal |
| 2002 | SAC | An intelligent biological information management system. | Mathew J. Palakal, Snehasis Mukhopadhyay, Javed Mostafa |
| 2001 | PSB | Detecting Gene Relations from MEDLINE Abstracts. | Matthew J. Stephens, Mathew J. Palakal, Snehasis Mukhopadhyay, Rajeev R. Raje, Javed Mostafa |
| 1998 | SIGCSE | An interactive learning environment for breadth-first computing science curriculum. | Mathew J. Palakal, Frederick W. Myers, Carla L. Boyd |
| 1996 | SIGIR | Detection of Shifts in User Interests for Personalized Information Filtering. | Wai Lam, Snehasis Mukhopadhyay, Javed Mostafa, Mathew J. Palakal |
| 1991 | ICTAI | A neural network based expert system model. | Anand V. Hudli, Mathew J. Palakal, Michael J. Zoran |
| 1989 | ICTAI | Feature extraction from speech spectrograms using multi-layered network models. | Mathew J. Palakal, Michael J. Zoran |
| 1987 | IJCAI | Use of Procedural Knowledge for Automatic Speech Recognition. | Renato de Mori, Ettore Merlo, Mathew J. Palakal, Jean Rouat |
| 1985 | IJCAI | On the Use of a Taxonomy of Time-Frequency Morphologies for Automatic Speech Recognition. | Renato de Mori, Mathew J. Palakal |