| 2026 | WABI | Quik 2.0: Efficient Large-Scale DNA Barcode Calling. | Steffen Schler, Antonia Schmidt, Matthias Mller-Hannemann |
| 2025 | ATMOS | Directed Temporal Tree Realization for Periodic Public Transport: Easy and Hard Cases. | Julia Meusel, Matthias Mller-Hannemann, Klaus Reinhardt |
| 2024 | ATMOS | Dynamic Traffic Assignment for Public Transport with Vehicle Capacities. | Julian Patzner, Matthias Mller-Hannemann |
| 2022 | ATMOS | Passenger-Aware Real-Time Planning of Short Turns to Reduce Delays in Public Transport. | Julian Patzner, Ralf Rckert, Matthias Mller-Hannemann |
| 2021 | ATMOS | Towards Improved Robustness of Public Transport by a Machine-Learned Oracle. | Matthias Mller-Hannemann, Ralf Rckert, Alexander Schiewe, Anita Schbel |
| 2019 | ATMOS | Vehicle Capacity-Aware Rerouting of Passengers in Delay Management. | Matthias Mller-Hannemann, Ralf Rckert, Sebastian S. Schmidt |
| 2018 | ATMOS | Robustness as a Third Dimension for Evaluating Public Transport Plans. | Markus Friedrich, Matthias Mller-Hannemann, Ralf Rckert, Alexander Schiewe, Anita Schbel |
| 2017 | ATMOS | Robustness Tests for Public Transport Planning. | Markus Friedrich, Matthias Mller-Hannemann, Ralf Rckert, Alexander Schiewe, Anita Schbel |
| 2016 | ATMOS | Sensitivity Analysis and Coupled Decisions in Passenger Flow-Based Train Dispatching. | Martin Lemnian, Matthias Mller-Hannemann, Ralf Rckert |
| 2016 | WABI | Gerbil: A Fast and Memory-Efficient k-mer Counter with GPU-Support. | Marius Erbert, Steffen Rechner, Matthias Mller-Hannemann |
| 2014 | ATMOS | Timing of Train Disposition: Towards Early Passenger Rerouting in Case of Delays. | Martin Lemnian, Ralf Rckert, Steffen Rechner, Christoph Blendinger, Matthias Mller-Hannemann |
| 2014 | DATA | Explorative Analysis of Heterogeneous, Unstructured, and Uncertain Data - A Computer Science Perspective on Biodiversity Research. | Clemens Beckstein, Sebastian Bcker, Martin Bogdan, Helge Bruelheide, H. Martin Bcker, Joachim Denzler, Peter Dittrich, Ivo Grosse, Alexander Hinneburg, Birgitta Knig-Ries, Felicitas Lffler, Manja Marz, Matthias Mller-Hannemann, Martin Winter, Wolf Zimmermann |
| 2013 | ATMOS | Recoverable Robust Timetable Information. | Marc Goerigk, Sacha Hee, Matthias Mller-Hannemann, Marie Schmidt, Anita Schbel |
| 2011 | ATMOS | Stochastic Delay Prediction in Large Train Networks. | Annabell Berger, Andreas Gebhardt, Matthias Mller-Hannemann, Martin Ostrowski |
| 2011 | ATMOS | The Price of Robustness in Timetable Information. | Marc Goerigk, Martin Knoth, Matthias Mller-Hannemann, Marie Schmidt, Anita Schbel |
| 2011 | ESA | Passenger Flow-Oriented Train Disposition. | Annabell Berger, Christian Blaar, Andreas Gebhardt, Matthias Mller-Hannemann, Mathias Schnee |
| 2011 | FCT | Dag Realizations of Directed Degree Sequences. | Annabell Berger, Matthias Mller-Hannemann |
| 2011 | WALCOM | Efficient Computation of Time-Dependent Centralities in Air Transportation Networks. | Annabell Berger, Matthias Mller-Hannemann, Steffen Rechner, Alexander Zock |
| 2010 | WG | Uniform Sampling of Digraphs with a Fixed Degree Sequence. | Annabell Berger, Matthias Mller-Hannemann |
| 2009 | ALENEX | Dealing with Large Hidden Constants: Engineering a Planar Steiner Tree PTAS. | Siamak Tazari, Matthias Mller-Hannemann |
| 2009 | ATMOS | Accelerating Time-Dependent Multi-Criteria Timetable Information is Harder Than Expected. | Annabell Berger, Daniel Delling, Andreas Gebhardt, Matthias Mller-Hannemann |
| 2008 | ATMOS | Efficient On-Trip Timetable Information in the Presence of Delays. | Lennart Frede, Matthias Mller-Hannemann, Mathias Schnee |
| 2008 | WG | A Faster Shortest-Paths Algorithm for Minor-Closed Graph Classes. | Siamak Tazari, Matthias Mller-Hannemann |
| 2007 | ATMOS | Improved Search for Night Train Connections. | Thorsten Gunkel, Matthias Mller-Hannemann, Mathias Schnee |
| 2007 | WADS | A Near Linear Time Approximation Scheme for Steiner Tree Among Obstacles in the Plane. | Matthias Mller-Hannemann, Siamak Tazari |
| 2006 | ATMOS | ATMOS 2006 Preface - Algorithmic Methods and Models for Optimization of Railways. | Riko Jacob, Matthias Mller-Hannemann |
| 2006 | ATMOS | ATMOS 2006 Abstracts Collection - Presentations at the 6th Workshop on Algorithmic Methods and Models for Optimization of Railways. | Riko Jacob, Matthias Mller-Hannemann |
| 2005 | ATMOS | Paying Less for Train Connections with MOTIS. | Matthias Mller-Hannemann, Mathias Schnee |
| 2005 | ISAAC | Hardness and Approximation of Octilinear Steiner Trees. | Matthias Mller-Hannemann, Anna Schulze |
| 2004 | ATMOS | Finding All Attractive Train Connections by Multi-criteria Pareto Search. | Matthias Mller-Hannemann, Mathias Schnee |
| 2004 | ATMOS | Timetable Information: Models and Algorithms. | Matthias Mller-Hannemann, Frank Schulz, Dorothea Wagner, Christos D. Zaroliagis |
| 2003 | ESA | Slack Optimization of Timing-Critical Nets. | Matthias Mller-Hannemann, Ute Zimmermann |
| 2003 | WADS | Approximation of Rectilinear Steiner Trees with Length Restrictions on Obstacles. | Matthias Mller-Hannemann, Sven Peyer |
| 1999 | ALENEX | Implementing Weighted b-Matching Algorithms: Insights from a Computational Study. | Matthias Mller-Hannemann, Alexander Schwartz |
| 1999 | GI | Kombinatorische Algorithmen zur Netzgenerierung im CAD. | Matthias Mller-Hannemann |
| 1999 | SODA | Combinatorics Helps for Hexahedral Mesh Generation in CAD. | Matthias Mller-Hannemann |
| 1997 | ESA | Improved Approximations for Minimum Cardinality Quadrangulations of Finite Element Meshes. | Matthias Mller-Hannemann, Karsten Weihe |
| 1997 | ISAAC | Complexity and Modeling Aspects of Mesh Refinement into Quadrilaterals. | Rolf H. Mhring, Matthias Mller-Hannemann |
| 1995 | SODA | Using Network Flows for Surface Modeling. | Rolf H. Mhring, Matthias Mller-Hannemann, Karsten Weihe |