| 2026 | AAAI | VALIANT: Prompt Instability for Active Learning in Black-Box Medical Imaging. | Dwarikanath Mahapatra, Behzad Bozorgtabar, Sudipta Roy, Imran Razzak, Mauricio Reyes |
| 2025 | MICCAI | On the Interplay of Human-AI Alignment, Fairness, and Performance Trade-Offs in Medical Imaging. | Haozhe Luo, Ziyu Zhou, Shelley Zixin Shu, Aurlie Pahud de Mortanges, Robert Berke, Mauricio Reyes |
| 2025 | MICCAI | Hybrid Explanation-Guided Learning for Transformer-Based Chest X-Ray Diagnosis. | Shelley Zixin Shu, Haozhe Luo, Alexander Poellinger, Mauricio Reyes |
| 2024 | AAAI | Combining Graph Transformers Based Multi-Label Active Learning and Informative Data Augmentation for Chest Xray Classification. | Dwarikanath Mahapatra, Behzad Bozorgtabar, Zongyuan Ge, Mauricio Reyes, Jean-Philippe Thiran |
| 2024 | MICCAI | DWARF: Disease-Weighted Network for Attention Map Refinement. | Haozhe Luo, Aurlie Pahud de Mortanges, Oana Inel, Mauricio Reyes |
| 2024 | MICCAI | AutoDoseRank: Automated Dosimetry-Informed Segmentation Ranking for Radiotherapy. | Zahira Mercado, Amith Kamath, Robert Poel, Jonas Willmann, Ekin Ermis, Elena Riggenbach, Lucas Mose, Nicolaus Andratschke, Mauricio Reyes |
| 2024 | MICCAI | INFORMER- Interpretability Founded Monitoring of Medical Image Deep Learning Models. | Shelley Zixin Shu, Aurlie Pahud de Mortanges, Alexander Poellinger, Dwarikanath Mahapatra, Mauricio Reyes |
| 2023 | MICCAI | Do We Really Need that Skip-Connection? Understanding Its Interplay with Task Complexity. | Amith Kamath, Jonas Willmann, Nicolaus Andratschke, Mauricio Reyes |
| 2023 | MICCAI | Class Specific Feature Disentanglement and Text Embeddings for Multi-label Generalized Zero Shot CXR Classification. | Dwarikanath Mahapatra, Antonio Jos Jimeno-Yepes, Shiba Kuanar, Sudipta Roy, Behzad Bozorgtabar, Mauricio Reyes, Zongyuan Ge |
| 2023 | MICCAI | Dose Guidance for Radiotherapy-Oriented Deep Learning Segmentation. | Elias Rfenacht, Robert Poel, Amith Kamath, Ekin Ermis, Stefan Scheib, Michael K. Fix, Mauricio Reyes |
| 2022 | ECCV | Medical Image Super Resolution by Preserving Interpretable and Disentangled Features. | Dwarikanath Mahapatra, Behzad Bozorgtabar, Mauricio Reyes |
| 2022 | ECCV | Multi-label Attention Map Assisted Deep Feature Learning for Medical Image Classification. | Dwarikanath Mahapatra, Mauricio Reyes |
| 2022 | MICCAI | Reliability of Quantification Estimates in MR Spectroscopy: CNNs vs Traditional Model Fitting. | Rudy Rizzo, Martyna Dziadosz, Sreenath P. Kyathanahally, Mauricio Reyes, Roland Kreis |
| 2020 | ICPR | Deep Learning-based Type Identification of Volumetric MRI Sequences. | Jean Pablo Vieira de Mello, Thiago M. Paixo, Rodrigo Ferreira Berriel, Mauricio Reyes, Claudine Badue, Alberto F. De Souza, Thiago Oliveira-Santos |
| 2020 | IJCNN | Interpretability vs. Complexity: The Friction in Deep Neural Networks. | Jos Pereira Amorim, Pedro H. Abreu, Mauricio Reyes, Joo A. M. Santos |
| 2020 | MICCAI | Learning Bloch Simulations for MR Fingerprinting by Invertible Neural Networks. | Fabian Balsiger, Alain Jungo, Olivier Scheidegger, Benjamin Marty, Mauricio Reyes |
| 2020 | MICCAI | Interpretability-Guided Content-Based Medical Image Retrieval. | Wilson Silva, Alexander Pollinger, Jaime S. Cardoso, Mauricio Reyes |
| 2020 | MICCAI | Towards MRI Progression Features for Glioblastoma Patients: From Automated Volumetry and Classical Radiomics to Deep Feature Learning. | Yannick Suter, Urspeter Knecht, Roland Wiest, Ekkehard Hewer, Philippe Schucht, Mauricio Reyes |
| 2019 | MICCAI | Learning Shape Representation on Sparse Point Clouds for Volumetric Image Segmentation. | Fabian Balsiger, Yannick Soom, Olivier Scheidegger, Mauricio Reyes |
| 2019 | MICCAI | Dual-Stream Pyramid Registration Network. | Xiaojun Hu, Miao Kang, Weilin Huang, Matthew R. Scott, Roland Wiest, Mauricio Reyes |
| 2019 | MICCAI | Assessing Reliability and Challenges of Uncertainty Estimations for Medical Image Segmentation. | Alain Jungo, Mauricio Reyes |
| 2019 | MICCAI | Surface-Based Brain Morphometry for the Prediction of Fluid Intelligence in the Neurocognitive Prediction Challenge 2019. | Michael Rebsamen, Christian Rummel, Ines Mrner-Lavanchy, Mauricio Reyes, Roland Wiest, Richard McKinley |
| 2018 | IECON | PV Farm Operation withIndependent Reactive Power Compensation Regardless of the Active Power Level Generation. | Mauricio Reyes, Jos R. Espinoza, Luis Morn, Samir Kouro |
| 2018 | MICCAI | Magnetic Resonance Fingerprinting Reconstruction via Spatiotemporal Convolutional Neural Networks. | Fabian Balsiger, Amaresha Shridhar Konar, Shivaprasad Chikop, Vimal Chandran, Olivier Scheidegger, Sairam Geethanath, Mauricio Reyes |
| 2018 | MICCAI | On the Effect of Inter-observer Variability for a Reliable Estimation of Uncertainty of Medical Image Segmentation. | Alain Jungo, Raphael Meier, Ekin Ermis, Marcela Blatti-Moreno, Evelyn Herrmann, Roland Wiest, Mauricio Reyes |
| 2018 | MICCAI | Efficient Active Learning for Image Classification and Segmentation Using a Sample Selection and Conditional Generative Adversarial Network. | Dwarikanath Mahapatra, Behzad Bozorgtabar, Jean-Philippe Thiran, Mauricio Reyes |
| 2018 | MICCAI | Automatic Brain Tumor Grading from MRI Data Using Convolutional Neural Networks and Quality Assessment. | Srgio Pereira, Raphael Meier, Victor Alves, Mauricio Reyes, Carlos A. Silva |
| 2018 | MICCAI | Enhancing Clinical MRI Perfusion Maps with Data-Driven Maps of Complementary Nature for Lesion Outcome Prediction. | Adriano Pinto, Srgio Pereira, Raphael Meier, Victor Alves, Roland Wiest, Carlos A. Silva, Mauricio Reyes |
| 2018 | MICCAI | Deep Learning Versus Classical Regression for Brain Tumor Patient Survival Prediction. | Yannick Suter, Alain Jungo, Michael Rebsamen, Urspeter Knecht, Evelyn Herrmann, Roland Wiest, Mauricio Reyes |
| 2017 | MICCAI | Towards Uncertainty-Assisted Brain Tumor Segmentation and Survival Prediction. | Alain Jungo, Richard McKinley, Raphael Meier, Urspeter Knecht, Luis Vera, Julin Prez-Beteta, David Molina-Garca, Vctor M. Prez-Garca, Roland Wiest, Mauricio Reyes |
| 2017 | MICCAI | Pooling-Free Fully Convolutional Networks with Dense Skip Connections for Semantic Segmentation, with Application to Brain Tumor Segmentation. | Richard McKinley, Alain Jungo, Roland Wiest, Mauricio Reyes |
| 2016 | MICCAI | Nabla-net: A Deep Dag-Like Convolutional Architecture for Biomedical Image Segmentation. | Richard McKinley, Rik Wepfer, Tom Gundersen, Franca Wagner, Andrew Chan, Roland Wiest, Mauricio Reyes |
| 2016 | MICCAI | CRF-Based Brain Tumor Segmentation: Alleviating the Shrinking Bias. | Raphael Meier, Urspeter Knecht, Roland Wiest, Mauricio Reyes |
| 2016 | MICCAI | High-Throughput Glomeruli Analysis of μ CT Kidney Images Using Tree Priors and Scalable Sparse Computation. | Carlos Correa Shokiche, Philipp Baumann, Ruslan Hlushchuk, Valentin Djonov, Mauricio Reyes |
| 2015 | MICCAI | Prediction of Trabecular Bone Anisotropy from Quantitative Computed Tomography Using Supervised Learning and a Novel Morphometric Feature Descriptor. | Vimal Chandran, Philippe Zysset, Mauricio Reyes |
| 2015 | MICCAI | Segmenting the Ischemic Penumbra: A Decision Forest Approach with Automatic Threshold Finding. | Richard McKinley, Levin Hni, Roland Wiest, Mauricio Reyes |
| 2015 | MICCAI | Parameter Learning for CRF-Based Tissue Segmentation of Brain Tumors. | Raphael Meier, Venetia Karamitsou, Simon Habegger, Roland Wiest, Mauricio Reyes |
| 2015 | RO-MAN | The Positive Effect of Negative Feedback in HRI Using a Facial Expression Robot. | Mauricio Reyes, Ivn Meza, Luis Alberto Pineda |
| 2014 | MICCAI | Generalized Multiresolution Hierarchical Shape Models via Automatic Landmark Clusterization. | Juan J. Cerrolaza, Arantxa Villanueva, Mauricio Reyes, Rafael Cabeza, Miguel ngel Gonzlez Ballester, Marius George Linguraru |
| 2014 | MICCAI | Spatially Varying Registration Using Gaussian Processes. | Thomas Gerig, Kamal Shahim, Mauricio Reyes, Thomas Vetter, Marcel Lthi |
| 2014 | MICCAI | Patient-Specific Semi-supervised Learning for Postoperative Brain Tumor Segmentation. | Raphael Meier, Stefan Bauer, Johannes Slotboom, Roland Wiest, Mauricio Reyes |
| 2014 | MICCAI | Patient Specific Simulation for Planning of Cochlear Implantation Surgery. | Sergio Vera, Frederic Prez, Clara Balust, Ramon Trueba, Jordi Rubi, Raul Calvo, Xavier Mazaira, Anandhan Dhanasingh, Livia Barazzetti, Mauricio Reyes, Mario Ceresa, Jens Fagertun, Hans Martin Kjer, Rasmus R. Paulsen, Miguel ngel Gonzlez Ballester |
| 2013 | MICCAI | Integrated Spatio-Temporal Segmentation of Longitudinal Brain Tumor Imaging Studies. | Stefan Bauer, Jean Tessier, Oliver Krieter, Lutz-Peter Nolte, Mauricio Reyes |
| 2013 | MICCAI | Prediction of Cranio-Maxillofacial Surgical Planning Using an Inverse Soft Tissue Modelling Approach. | Kamal Shahim, Philipp Jrgens, Philippe C. Cattin, Lutz-Peter Nolte, Mauricio Reyes |
| 2012 | MICCAI | Population-Based Design of Mandibular Plates Based on Bone Quality and Morphology. | Habib Bousleiman, Christof Seiler, Tateyuki Iizuka, Lutz-Peter Nolte, Mauricio Reyes |
| 2012 | MICCAI | Simultaneous Multiscale Polyaffine Registration by Incorporating Deformation Statistics. | Christof Seiler, Xavier Pennec, Mauricio Reyes |
| 2011 | MICCAI | Fully Automatic Segmentation of Brain Tumor Images Using Support Vector Machine Classification in Combination with Hierarchical Conditional Random Field Regularization. | Stefan Bauer, Lutz-Peter Nolte, Mauricio Reyes |
| 2011 | MICCAI | Minimization of Intra-Operative Shaping of Orthopaedic Fixation Plates: A Population-Based Design. | Habib Bousleiman, Lucas E. Ritacco, Lutz-Peter Nolte, Mauricio Reyes |
| 2011 | MICCAI | Geometry-Aware Multiscale Image Registration via OBBTree-Based Polyaffine Log-Demons. | Christof Seiler, Xavier Pennec, Mauricio Reyes |
| 2010 | MICCAI | Automated Intervertebral Disc Detection from Low Resolution, Sparse MRI Images for the Planning of Scan Geometries. | Xiao Dong, Huanxiang Lu, Yasuo Sakurai, Hitoshi Yamagata, Guoyan Zheng, Mauricio Reyes |
| 2010 | MICCAI | Anatomically-Driven Soft-Tissue Simulation Strategy for Cranio-Maxillofacial Surgery Using Facial Muscle Template Model. | Hyungmin Kim, Philipp Jrgens, Lutz-Peter Nolte, Mauricio Reyes |
| 2009 | MICCAI | Conditional Variability of Statistical Shape Models Based on Surrogate Variables. | Rmi Blanc, Mauricio Reyes, Christof Seiler, Gbor Szkely |
| 2005 | MICCAI | Respiratory Motion Correction in Emission Tomography Image Reconstruction. | Mauricio Reyes, Grgoire Malandain, Pierre Malick Koulibaly, Miguel ngel Gonzlez Ballester, Jacques Darcourt |