| 2022 | ICPR | Entity-Driven Fact-Aware Abstractive Summarization of Biomedical Literature. | Amanuel Alambo, Tanvi Banerjee, Krishnaprasad Thirunarayan, Michael L. Raymer |
| 2017 | BIBE | Latent Dirichlet Allocation for Classification using Gene Expression Data. | Hima Bindu Yalamanchili, Soon Jye Kho, Michael L. Raymer |
| 2017 | NeSy | Explaining Trained Neural Networks with Semantic Web Technologies: First Steps. | Md. Kamruzzaman Sarker, Ning Xie, Derek Doran, Michael L. Raymer, Pascal Hitzler |
| 2009 | BIBE | A Data Mining Approach to Predicting Phylum for Microbial Organisms Using Genome-Wide Sequence Data. | Rao M. Kotamarti, Douglas W. Raiford, Michael L. Raymer, Margaret H. Dunham |
| 2007 | BIBE | A Proposed Statistical Protocol for the Analysis of Metabolic Toxicological Data Derived from NMR Spectroscopy. | Benjamin J. Kelly, Paul E. Anderson, Nicholas V. Reo, Nicholas J. DelRaso, Travis E. Doom, Michael L. Raymer |
| 2007 | BIBE | A Multi-Objective Genetic Algorithm that Employs a Hybrid Approach for Isolating Codon Usage Bias Indicative of Translational Efficiency. | Douglas W. Raiford, Dan E. Krane, Travis E. Doom, Michael L. Raymer |
| 2006 | BIBE | Isolation and Visualization of Codon Usage Biases. | Douglas W. Raiford, Dan E. Krane, Travis E. Doom, Michael L. Raymer |
| 2006 | BIBE | Parsimony approach to test the Evolving Master Gene hypothesis for human Alu repeats. | Sridhar Ramachandran, Travis E. Doom, Michael L. Raymer, Dan E. Krane |
| 2005 | BIBE | Stochastic Model of Protease-Ligand Reactions. | Paul E. Anderson, Douglas W. Raiford, Deacon J. Sweeney, Travis E. Doom, Michael L. Raymer |
| 2005 | CEC | GA-facilitated KNN classifier optimization with varying similarity measures. | Michael R. Peterson, Travis E. Doom, Michael L. Raymer |
| 2005 | CEC | Balanced accuracy for feature subset selection with genetic algorithms. | Michael R. Peterson, Michael L. Raymer, Gary B. Lamont |
| 2005 | GECCO | GA-facilitated classifier optimization with varying similarity measures. | Michael R. Peterson, Travis E. Doom, Michael L. Raymer |
| 2004 | BIBE | Indexing Genomic Databases. | Gina Cooper, Michael L. Raymer, Travis E. Doom, Dan E. Krane, Natsuhiko Futamura |
| 2004 | GECCO | GA-Facilitated Knowledge Discovery and Pattern Recognition Optimization Applied to the Biochemistry of Protein Solvation. | Michael R. Peterson, Travis E. Doom, Michael L. Raymer |
| 2002 | SIGCSE | A proposed undergraduate bioinformatics curriculum for computer scientists. | Travis E. Doom, Michael L. Raymer, Dan E. Krane, Oscar Garcia |
| 2001 | BIBE | PocketMol: A Molecular Visualization Tool for the PocketPC (short paper). | Jason R. Gilder, Michael L. Raymer, Travis E. Doom |
| 2001 | BIBE | Knowledge Discovery in Biological Databasets Using a Hybrid Bayes Classifier/Evolutionary Algorithm. | Michael L. Raymer, Leslie A. Kuhn, William F. Punch III |
| 2001 | BIBE | Profile Combinatorics for Fragment Selection in Comparative Protein Structure Modeling. | Deacon J. Sweeney, Gerald M. Alter, Michael L. Raymer, Travis E. Doom |