| 2026 | WABI | FBApro: A Fast, Simple Linear Transformation for Diverse Metabolic Modeling Tasks. | Ariel Bruner, Mona Singh |
| 2022 | RECOMB | Learning Probabilistic Protein-DNA Recognition Codes from DNA-Binding Specificities Using Structural Mappings. | Joshua L. Wetzel, Kaiqian Zhang, Mona Singh |
| 2020 | RECOMB | A Guided Network Propagation Approach to Identify Disease Genes that Combines Prior and New Information. | Borislav H. Hristov, Bernard Chazelle, Mona Singh |
| 2017 | RECOMB | Network-Based Coverage of Mutational Profiles Reveals Cancer Genes. | Borislav H. Hristov, Mona Singh |
| 2010 | PSB | Session Introduction. | Tanya Y. Berger-Wolf, Teresa M. Przytycka, Mona Singh, Donna K. Slonim |
| 2009 | PSB | Session Introduction. | Tanya Y. Berger-Wolf, Teresa M. Przytycka, Mona Singh |
| 2006 | CPM | A Compact Mathematical Programming Formulation for DNA Motif Finding. | Carl Kingsford, Elena Zaslavsky, Mona Singh |
| 2005 | ISMB | Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps. | Elena Nabieva, Kam Jim, Amit Agarwal, Bernard Chazelle, Mona Singh |
| 2001 | RECOMB | Towards predicting coiled-coil protein interactions. | Mona Singh, Peter S. Kim |
| 1997 | Interspeech | Experiments in spoken queries for document retrieval. | J. Barnett, Stephen W. Anderson, J. Broglio, Mona Singh, Randy Hudson, S. W. Kuo |
| 1997 | ISMIS | Automating Spoken Dialogue Systems. | Mona Singh, James Barnett, Munindar P. Singh |
| 1997 | RECOMB | An iterative method for improved protein structural motif recognition. | Bonnie Berger, Mona Singh |
| 1996 | ECAI | Designing a Portable Spoken Dialogue System. | James Barnett, Mona Singh |
| 1995 | COLT | Piecemeal Graph Exploration by a Mobile Robot (Extended Abstract). | Baruch Awerbuch, Margrit Betke, Ronald L. Rivest, Mona Singh |
| 1993 | COLT | Piecemeal Learning of an Unknown Environment. | Margrit Betke, Ronald L. Rivest, Mona Singh |
| 1992 | ECAI | Computing the Temporal Structure of Events in Natural Language. | Mona Singh, Munindar P. Singh |
| 1990 | COLT | Learning Functions of | Avrim Blum, Mona Singh |