| 2012 | IDA | Intelligent Data Analysis of Human Genetic Data. | Paola Sebastiani |
| 2012 | PACBB | Comparing Bowtie and BWA to Align Short Reads from a RNA-Seq Experiment. | Nuria Medina-Medina, A. Broka, Sean M. Lacey, Honghuang Lin, E. S. Klings, C. T. Baldwin, M. H. Steinberg, Paola Sebastiani |
| 2006 | CBMS | Dynamic Bayesian Networks in Modelling Cellular Systems: a Critical Appraisal on Simulated Data. | Fulvia Ferrazzi, Paola Sebastiani, Isaac S. Kohane, Marco Ramoni, Riccardo Bellazzi |
| 2006 | MDAI | Bayesian Correction for SNP Ascertainment Bias. | Mara M. Abad-Grau, Paola Sebastiani |
| 2006 | RECOMB | Clustering Short Gene Expression Profiles. | Ling Wang, Marco Ramoni, Paola Sebastiani |
| 2003 | IDA | Automated Detection of Influenza Epidemics with Hidden Markov Models. | Toni M. Rath, Maximo Carreras, Paola Sebastiani |
| 2001 | ICML | Clustering Continuous Time Series. | Paola Sebastiani, Marco Ramoni |
| 2000 | AAAI | Multivariate Clustering by Dynamics. | Marco Ramoni, Paola Sebastiani, Paul R. Cohen |
| 1999 | AISTATS | Learning conditional probabilities from incomplete databases - An experimental comparison. | Marco Ramoni, Paola Sebastiani |
| 1999 | AISTATS | Model folding for data subject to nonresponse. | Paola Sebastiani, Marco Ramoni |
| 1999 | IDA | Discovering Dynamics Using Bayesian Clustering. | Paola Sebastiani, Marco Ramoni, Paul R. Cohen, John Warwick, James Davis |
| 1998 | UAI | Decision Theoretic Foundations of Graphical Model Selection. | Paola Sebastiani, Marco Ramoni |
| 1997 | AISTATS | Robust Parameter Learning in Bayesian Networks with Missing Data. | Marco Ramoni, Paola Sebastiani |
| 1997 | IDA | The Use of Exogenous Knowledge to Learn Bayesian Networks from Incomplete Databases. | Marco Ramoni, Paola Sebastiani |
| 1997 | UAI | Learning Bayesian Networks from Incomplete Databases. | Marco Ramoni, Paola Sebastiani |