| 2019 | SCAM | WAL: A Tool for Diagnosing Accessibility Issues and Evolving Legacy Web Systems at Runtime. | Wanessa Teotnio, Pablo Gonzalez, Paulo Maia, Pedro Muniz |
| 2017 | GECCO | Identification of robust strain designs via tandem pFBA/LMOMA phenotype prediction. | Paulo Maia, Isabel Rocha, Miguel Rocha |
| 2016 | ICCSA | Using Scrum Together with UML Models: A Collaborative University-Industry R&D Software Project. | Nuno Santos, Joo M. Fernandes, Maria Sameiro Carvalho, Pedro V. Silva, Fbio A. Fernandes, Mrcio P. Rebelo, Diogo Barbosa, Paulo Maia, Marco Couto, Ricardo J. Machado |
| 2016 | PACBB | Development of an Integrated Framework for Minimal Cut Set Enumeration in Constraint-Based Models. | Vtor Vieira, Paulo Maia, Isabel Rocha, Miguel Rocha |
| 2013 | CEC | An integrated framework for strain optimization. | Paulo Maia, Isabel Rocha, Miguel Rocha |
| 2011 | PACBB | A Study on the Robustness of Strain Optimization Algorithms. | Paulo Vilaa, Paulo Maia, Miguel Rocha |
| 2009 | ISDA | Implementing Metaheuristic Optimization Algorithms with JECoLi. | Pedro Evangelista, Paulo Maia, Miguel Rocha |
| 2008 | BIBE | A framework for the development of Biomedical Text Mining software tools. | Anlia Loureno, Rafael Carreira, Snia Carneiro, Paulo Maia, Daniel Glez-Pea, Florentino Fdez-Riverola, Eugnio C. Ferreira, Isabel Rocha, Miguel Rocha |
| 2008 | BIBE | Evaluating evolutionary multiobjective algorithms for the in silico optimization of mutant strains. | Paulo Maia, Isabel Rocha, Eugnio C. Ferreira, Miguel Rocha |
| 2007 | EPIA | Evaluating Simulated Annealing Algorithms in the Optimization of Bacterial Strains. | Miguel Rocha, Rui Mendes, Paulo Maia, Jos P. Pinto, Isabel Rocha, Eugnio C. Ferreira |
| 2007 | GECCO | A platform for the selection of genes in DNA microarraydata using evolutionary algorithms. | Miguel Rocha, Rui Mendes, Paulo Maia, Daniel Glez-Pea, Florentino Fdez-Riverola |