| 2020 | RECOMB | MosaicFlye: Resolving Long Mosaic Repeats Using Long Reads. | Anton Bankevich, Pavel A. Pevzner |
| 2019 | RECOMB | De Novo Peptide Sequencing Reveals a Vast Cyclopeptidome in Human Gut and Other Environments. | Bahar Behsaz, Hosein Mohimani, Alexey A. Gurevich, Andrey D. Prjibelski, Mark F. Fisher, Larry Smarr, Pieter C. Dorrestein, Joshua S. Mylne, Pavel A. Pevzner |
| 2018 | RECOMB | Long Reads Enable Accurate Estimates of Complexity of Metagenomes. | Anton Bankevich, Pavel A. Pevzner |
| 2018 | RECOMB | Assembly of Long Error-Prone Reads Using Repeat Graphs. | Mikhail Kolmogorov, Jeffrey Yuan, Yu Lin, Pavel A. Pevzner |
| 2017 | RECOMB | Reconstructing Antibody Repertoires from Error-Prone Immunosequencing Datasets. | Alexander Shlemov, Sergey Bankevich, Andrey V. Bzikadze, Yana Safonova, Pavel A. Pevzner |
| 2016 | RECOMB | Assembly of Long Error-Prone Reads Using de Bruijn Graphs. | Yu Lin, Max W. Shen, Jeffrey Yuan, Mark Chaisson, Pavel A. Pevzner |
| 2016 | RECOMB | metaSPAdes: A New Versatile de novo Metagenomics Assembler. | Sergey Nurk, Dmitry Meleshko, Anton I. Korobeynikov, Pavel A. Pevzner |
| 2015 | RECOMB | Immunoglobulin Classification Using the Colored Antibody Graph. | Stefano Bonissone, Pavel A. Pevzner |
| 2014 | RECOMB | dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes. | Yana Safonova, Anton Bankevich, Pavel A. Pevzner |
| 2014 | WABI | Manifold de Bruijn Graphs. | Yu Lin, Pavel A. Pevzner |
| 2013 | RECOMB | UniNovo: A Universal Tool for de Novo Peptide Sequencing. | Kyowon Jeong, Sangtae Kim, Pavel A. Pevzner |
| 2013 | RECOMB | Identification of Ultramodified Proteins Using Top-Down Spectra. | Xiaowen Liu, Shawna Hengel, Si Wu, Nikola Tolic, Ljiljana Pasa-Tolic, Pavel A. Pevzner |
| 2013 | RECOMB | Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads. | Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton I. Korobeynikov, Alla L. Lapidus, Andrey D. Prjibelsky, Alex Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey S. McLean, Roger Lasken, Scott R. Clingenpeel, Tanja Woyke, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner |
| 2012 | RECOMB | Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly. | Son K. Pham, Dmitry Antipov, Alexander Sirotkin, Glenn Tesler, Pavel A. Pevzner, Max A. Alekseyev |
| 2012 | WABI | MORPH-PRO: A Novel Algorithm and Web Server for Protein Morphing. | Natalie Castellana, Andrey Lushnikov, Piotr Rotkiewicz, Natasha Sefcovic, Pavel A. Pevzner, Adam Godzik, Kira Vyatkina |
| 2012 | WABI | MS-DPR: An Algorithm for Computing Statistical Significance of Spectral Identifications of Non-linear Peptides. | Hosein Mohimani, Sangtae Kim, Pavel A. Pevzner |
| 2012 | WABI | From de Bruijn Graphs to Rectangle Graphs for Genome Assembly. | Nikolay Vyahhi, Alex Pyshkin, Son K. Pham, Pavel A. Pevzner |
| 2011 | RECOMB | Paired de Bruijn Graphs: A Novel Approach for Incorporating Mate Pair Information into Genome Assemblers. | Paul Medvedev, Son K. Pham, Mark Chaisson, Glenn Tesler, Pavel A. Pevzner |
| 2011 | RECOMB | Multiplex De Novo Sequencing of Peptide Antibiotics. | Hosein Mohimani, Wei-Ting Liu, Yu-Liang Yang, Susana P. Gaudncio, William Fenical, Pieter C. Dorrestein, Pavel A. Pevzner |
| 2011 | RECOMB | Blocked Pattern Matching Problem and Its Applications in Proteomics. | Julio Ng, Amihood Amir, Pavel A. Pevzner |
| 2010 | PSB | Session Introduction. | Bernard M. E. Moret, Webb Miller, Pavel A. Pevzner, David Sankoff |
| 2010 | RECOMB | Limited Lifespan of Fragile Regions in Mammalian Evolution. | Max A. Alekseyev, Pavel A. Pevzner |
| 2010 | RECOMB | Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra. | Kyowon Jeong, Sangtae Kim, Nuno Bandeira, Pavel A. Pevzner |
| 2009 | PSB | Session Introduction. | Bernard M. E. Moret, Webb Miller, Pavel A. Pevzner, David Sankoff |
| 2009 | WABI | Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes. | Qian Peng, Max A. Alekseyev, Glenn Tesler, Pavel A. Pevzner |
| 2008 | ISMB | Multi-spectra peptide sequencing and its applications to multistage mass spectrometry. | Nuno Bandeira, Jesper V. Olsen, Matthias Mann, Pavel A. Pevzner |
| 2008 | RECOMB | De Novo Sequencing of Nonribosomal Peptides. | Nuno Bandeira, Julio Ng, Dario Meluzzi, Roger G. Linington, Pieter C. Dorrestein, Pavel A. Pevzner |
| 2007 | APBC | Protein Identification via Spectral Networks Analysis. | Pavel A. Pevzner |
| 2007 | SODA | Whole genome duplications, multi-break rearrangements, and genome halving problem. | Max A. Alekseyev, Pavel A. Pevzner |
| 2007 | WABI | Shotgun Protein Sequencing. | Pavel A. Pevzner |
| 2006 | APBC | Characterization of Multi-Charge Mass Spectra for Peptide Sequencing. | Ket Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner |
| 2006 | ISMB | Comparative genomics reveals unusually long motifs in mammalian genomes. | Neil Christopher Jones, Pavel A. Pevzner |
| 2006 | RECOMB | A New Approach to Protein Identification. | Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A. Pevzner |
| 2005 | ISMB | Untitled record | Alkes L. Price, Neil Christopher Jones, Pavel A. Pevzner |
| 2005 | RECOMB | Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry. | Ari Frank, Stephen Tanner, Pavel A. Pevzner |
| 2004 | ISMB | Reconstructing tumor amplisomes. | Benjamin J. Raphael, Pavel A. Pevzner |
| 2004 | RECOMB | Untitled record | Pavel A. Pevzner, Haixu Tang, Glenn Tesler |
| 2003 | ECCB | Finding subtle motifs by branching from sample strings. | Alkes L. Price, Sriram Ramabhadran, Pavel A. Pevzner |
| 2003 | ECCB | Reconstructing tumor genome architectures. | Benjamin J. Raphael, Stanislav Volik, Colin C. Collins, Pavel A. Pevzner |
| 2003 | PSB | Genome-Wide Analysis of Bacterial Promoter Regions. | Eleazar Eskin, Uri Keich, Mikhail S. Gelfand, Pavel A. Pevzner |
| 2003 | RECOMB | Engineering a scalable placement heuristic for DNA probe arrays. | Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky |
| 2003 | RECOMB | Transforming men into mice: the Nadeau-Taylor chromosomal breakage model revisited. | Pavel A. Pevzner, Glenn Tesler |
| 2002 | ISMB | Finding composite regulatory patterns in DNA sequences. | Eleazar Eskin, Pavel A. Pevzner |
| 2002 | ISMB | Splicing graphs and EST assembly problem. | Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner |
| 2002 | PSB | EULER-PCR: Finishing Experiments for Repeat Resolution. | Zufar Mulyukov, Pavel A. Pevzner |
| 2002 | PSB | Finding Weak Motifs in DNA Sequences. | Sing-Hoi Sze, Mikhail S. Gelfand, Pavel A. Pevzner |
| 2002 | RECOMB | Finding motifs in the twilight zone. | Uri Keich, Pavel A. Pevzner |
| 2002 | WABI | Border Length Minimization in DNA Array Design. | Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky |
| 2001 | ISMB | Fragment assembly with double-barreled data. | Pavel A. Pevzner, Haixu Tang |
| 2001 | RECOMB | A new approach to sequence comparison: normalized sequence alignment. | Abdullah N. Arslan, mer Egecioglu, Pavel A. Pevzner |
| 2001 | RECOMB | A new approach to fragment assembly in DNA sequencing. | Pavel A. Pevzner, Haixu Tang, Michael S. Waterman |
| 2000 | ISMB | Combinatorial Approaches to Finding Subtle Signals in DNA Sequences. | Pavel A. Pevzner, Sing-Hoi Sze |
| 2000 | RECOMB | Mutation-tolerant protein identification by mass-spectrometry. | Pavel A. Pevzner, Vlado Danck, Chris L. Tang |
| 1999 | ISMB | Fidelity Probes for DNA Arrays. | Earl Hubbell, Pavel A. Pevzner |
| 1999 | SODA | The Complexity of Gene Placement. | Leslie Ann Goldberg, Paul W. Goldberg, Mike Paterson, Pavel A. Pevzner, Sleyman Cenk Sahinalp, Elizabeth Sweedyk |
| 1998 | SPIRE | SST versus EST in Gene Recognition (Invited Paper). | Andrey A. Mironov, Pavel A. Pevzner |
| 1997 | RECOMB | Las Vegas algorithms for gene recognition: suboptimal and error-tolerant spliced alignment. | Sing-Hoi Sze, Pavel A. Pevzner |
| 1996 | CPM | Spliced Alignment: A New Approach to Gene Recognition. | Mikhail S. Gelfand, Andrey A. Mironov, Pavel A. Pevzner |
| 1996 | SODA | To Cut... or Not to Cut (Applications of Comparative Physical Maps in Molecular Evolution). | Sridhar Hannenhalli, Pavel A. Pevzner |
| 1995 | FOCS | Transforming Men into Mice (Polynomial Algorithm for Genomic Distance Problem). | Sridhar Hannenhalli, Pavel A. Pevzner |
| 1995 | SODA | Sorting Permutations by Transpositions. | Vineet Bafna, Pavel A. Pevzner |
| 1995 | STOC | Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals. | Sridhar Hannenhalli, Pavel A. Pevzner |
| 1994 | CPM | Approximation Algorithms for Multiple Sequence Alignment. | Vineet Bafna, Eugene L. Lawler, Pavel A. Pevzner |
| 1994 | CPM | Parametric Recomuting in Alignment Graphs. | Xiaoqiu Huang, Pavel A. Pevzner, Webb Miller |
| 1994 | MFCS | Towards DNA Sequencing Chips. | Pavel A. Pevzner, Robert J. Lipshutz |
| 1993 | CPM | A Fast Filtration Algorithm for the Substring Matching Problem. | Pavel A. Pevzner, Michael S. Waterman |
| 1993 | CPM | Multiple Sequence Comparison and n-Dimensional Image Reconstruction. | Martin Vingron, Pavel A. Pevzner |
| 1993 | FOCS | Genome Rearrangements and Sorting by Reversals | Vineet Bafna, Pavel A. Pevzner |
| 1992 | CPM | Multiple Alignment with Guaranteed Error Bounds and Communication Cost. | Pavel A. Pevzner |
| 1992 | CPM | Matrix Longest Common Subsequence Problem, Duality and Hibert Bases. | Pavel A. Pevzner, Michael S. Waterman |