| 2023 | WABI | Simultaneous Reconstruction of Duplication Episodes and Gene-Species Mappings. | Pawel Grecki, Natalia Rutecka, Agnieszka Mykowiecka, Jaroslaw Paszek |
| 2022 | COCOON | Rooting Gene Trees via Phylogenetic Networks. | Jerzy Tiuryn, Natalia Rutecka, Pawel Grecki |
| 2021 | WABI | Conflict Resolution Algorithms for Deep Coalescence Phylogenetic Networks. | Marcin Wawerka, Dawid Dabkowski, Natalia Rutecka, Agnieszka Mykowiecka, Pawel Grecki |
| 2019 | COCOON | Feasibility Algorithms for the Duplication-Loss Cost. | Pawel Grecki, Alexey Markin, Oliver Eulenstein |
| 2018 | COCOON | Cophenetic Distances: A Near-Linear Time Algorithmic Framework. | Pawel Grecki, Alexey Markin, Oliver Eulenstein |
| 2017 | RECOMB | New Algorithms for the Genomic Duplication Problem. | Jaroslaw Paszek, Pawel Grecki |
| 2017 | WABI | Detecting Locus Acquisition Events in Gene Trees. | Michal Aleksander Ciach, Anna Muszewska, Pawel Grecki |
| 2012 | COCOON | Deep Coalescence Reconciliation with Unrooted Gene Trees: Linear Time Algorithms. | Pawel Grecki, Oliver Eulenstein |
| 2004 | RECOMB | Reconciliation problems for duplication, loss and horizontal gene transfer. | Pawel Grecki |
| 2004 | RECOMB | On the Structure of Reconciliations. | Pawel Grecki, Jerzy Tiuryn |