| 2008 | CCGRID | Formal Verification of a Grid Resource Allocation Protocol. | Mathias Dalheimer, Franz-Josef Pfreundt, Peter Merz |
| 2008 | CCGRID | On the Construction of a Super-Peer Topology underneath Middleware for Distributed Computing. | Peter Merz, Jan Ubben, Matthias Priebe |
| 2008 | ICIW | Super-Peer Selection in Peer-to-Peer Networks Using Network Coordinates. | Peter Merz, Matthias Priebe, Steffen Wolf |
| 2008 | PDP | A Simulation Framework for Distributed Super-Peer Topology Construction Using Network Coordinates. | Peter Merz, Matthias Priebe, Steffen Wolf |
| 2008 | PPSN | A Distributed Memetic Algorithm for the Routing and Wavelength Assignment Problem. | Thomas Fischer, Kerstin Bauer, Peter Merz |
| 2008 | PPSN | An Iterated Local Search Approach for Finding Provably Good Solutions for Very Large TSP Instances. | Peter Merz, Jutta Huhse |
| 2007 | ISPDC | A New Iterative Method to Improve Network Coordinates-Based Internet Distance Estimation. | Peter Merz, Matthias Priebe |
| 2007 | OPODIS | Distributed Approximation Algorithms for Finding 2-Edge-Connected Subgraphs. | Sven Oliver Krumke, Peter Merz, Tim Nonner, Katharina Rupp |
| 2006 | PPSN | Evolutionary Local Search for Designing Peer-to-Peer Overlay Topologies Based on Minimum Routing Cost Spanning Trees. | Peter Merz, Steffen Wolf |
| 2005 | CCGRID | Efficient broadcast in P2P grids. | Peter Merz, Katja Gorunova |
| 2005 | HPDC | Calana: a general-purpose agent-based grid scheduler. | Mathias Dalheimer, Franz-Josef Pfreundt, Peter Merz |
| 2005 | PPAM | Agent-Based Grid Scheduling with Calana. | Mathias Dalheimer, Franz-Josef Pfreundt, Peter Merz |
| 2005 | WISE | Reliable Multicast and Its Probabilistic Model for Job Submission in Peer-to-Peer Grids. | Peter Merz, Katja Gorunova |
| 2003 | CEC | Clustering gene expression data with memetic algorithms based on minimum spanning trees. | Nora Speer, Peter Merz, Christian Spieth, Andreas Zell |
| 2003 | IDA | An Iterated Local Search Approach for Minimum Sum-of-Squares Clustering. | Peter Merz |
| 2002 | GECCO | A Comparison Of Memetic Recombination Operators For The Traveling Salesman Problem. | Peter Merz |
| 2002 | PPSN | Evolution Strategy with Neighborhood Attraction Using a Neural Gas Approach. | Jutta Huhse, Thomas Villmann, Peter Merz, Andreas Zell |
| 2002 | PPSN | Clustering Gene Expression Profiles with Memetic Algorithms. | Peter Merz, Andreas Zell |
| 1999 | CEC | A comparison of memetic algorithms, tabu search, and ant colonies for the quadratic assignment problem. | Peter Merz, Bernd Freisleben |
| 1998 | PPSN | Memetic Algorithms and the Fitness Landscape of the Graph Bi-Partitioning Problem. | Peter Merz, Bernd Freisleben |
| 1997 | ICEC | Genetic local search for the TSP: new results. | Peter Merz, Bernd Freisleben |
| 1996 | ICEC | A Genetic Local Search Algorithm for Solving Symmetric and Asymmetric Traveling Salesman Problems. | Bernd Freisleben, Peter Merz |
| 1996 | PPSN | New Genetic Local Search Operators for the Traveling Salesman Problem. | Bernd Freisleben, Peter Merz |