| 2026 | AAAI | EPO: Diverse and Realistic Protein Ensemble Generation via Energy Preference Optimization. | Yuancheng Sun, Yuxuan Ren, Zhaoming Chen, Xu Han, Kang Liu, Qiwei Ye |
| 2026 | ACL | STELLA: A Multimodal LLM for Protein Functional Annotation via Unified Sequence-Structure Encoding. | Hongwang Xiao, Wenjun Lin, Xi Chen, Hui Wang, Kai Chen, Jiashan Li, Yuancheng Sun, Sicheng Dai, Boya Wu, Qiwei Ye |
| 2025 | ICLR | CryoGEN: Generative Energy-based Models for Cryogenic Electron Tomography Reconstruction. | Yunfei Teng, Yuxuan Ren, Kai Chen, Xi Chen, Zhaoming Chen, Qiwei Ye |
| 2025 | ICLR | Long Context Compression with Activation Beacon. | Peitian Zhang, Zheng Liu, Shitao Xiao, Ninglu Shao, Qiwei Ye, Zhicheng Dou |
| 2025 | KSEM | Harnessing Heterogeneous Social Networks for Better Group Recommendations: An Integrated Approach Towards Cold-Start Problem. | Yunwei Zhao, Songtao Peng, Linbo Qiao, Qiwei Ye, Han Han, Shanqing Yu |
| 2024 | ICASSP | FDIG: A Fine-Grained Data Integration Approach for Group Recommendation. | Qiwei Ye, Fan Yang, Jing Lu, Yu Tang, Linbo Qiao, Yunwei Zhao |
| 2024 | ICLR | Beyond Weisfeiler-Lehman: A Quantitative Framework for GNN Expressiveness. | Bohang Zhang, Jingchu Gai, Yiheng Du, Qiwei Ye, Di He, Liwei Wang |
| 2024 | ICML | Do Efficient Transformers Really Save Computation? | Kai Yang, Jan Ackermann, Zhenyu He, Guhao Feng, Bohang Zhang, Yunzhen Feng, Qiwei Ye, Di He, Liwei Wang |
| 2024 | IJCNN | FEW: Multi-modal Recommendation for Cold-Start. | Qiwei Ye, Linbo Qiao, Zhixin Ou, Kaixi Yang, Fan Yang |
| 2021 | IJCAI | MFVFD: A Multi-Agent Q-Learning Approach to Cooperative and Non-Cooperative Tasks. | Tianhao Zhang, Qiwei Ye, Jiang Bian, Guangming Xie, Tie-Yan Liu |
| 2021 | ICRA | Decentralized Circle Formation Control for Fish-like Robots in the Real-world via Reinforcement Learning. | Tianhao Zhang, Yueheng Li, Shuai Li, Qiwei Ye, Chen Wang, Guangming Xie |
| 2019 | ICLR | G-SGD: Optimizing ReLU Neural Networks in its Positively Scale-Invariant Space. | Qi Meng, Shuxin Zheng, Huishuai Zhang, Wei Chen, Qiwei Ye, Zhi-Ming Ma, Nenghai Yu, Tie-Yan Liu |
| 2006 | UIC | FreeSpeech: A Novel Wireless Approach for Conference Projecting and Cooperating. | Wenbin Jiang, Hai Jin, Zhiyuan Shao, Qiwei Ye |