| 2024 | RECOMB | Determining Optimal Placement of Copy Number Aberration Impacted Single Nucleotide Variants in a Tumor Progression History. | Chih Hao Wu, Suraj Joshi, Welles Robinson, Paul F. Robbins, Russell Schwartz, Sleyman Cenk Sahinalp, Salem Malikic |
| 2019 | RECOMB | Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell Sequencing Data. | Haoyun Lei, Bochuan Lyu, E. Michael Gertz, Alejandro A. Schffer, Xulian Shi, Kui Wu, Guibo Li, Liqin Xu, Yong Hou, Michael Dean, Russell Schwartz |
| 2018 | COCOON | Reconstructing Tumor Evolution and Progression in Structurally Variant Cancer Cells. | Russell Schwartz |
| 2011 | RECOMB | An Optimization-Based Sampling Scheme for Phylogenetic Trees. | Navodit Misra, Guy E. Blelloch, R. Ravi, Russell Schwartz |
| 2011 | SODA | Approximate Dynamic Programming using Halfspace Queries and Multiscale Monge Decomposition. | Gary L. Miller, Richard Peng, Russell Schwartz, Charalampos E. Tsourakakis |
| 2010 | RECOMB | Generalized Buneman Pruning for Inferring the Most Parsimonious Multi-state Phylogeny. | Navodit Misra, Guy E. Blelloch, R. Ravi, Russell Schwartz |
| 2006 | ICALP | Fixed Parameter Tractability of Binary Near-Perfect Phylogenetic Tree Reconstruction. | Guy E. Blelloch, Kedar Dhamdhere, Eran Halperin, R. Ravi, Russell Schwartz, Srinath Sridhar |
| 2006 | ICCS | Simple Reconstruction of Binary Near-Perfect Phylogenetic Trees. | Srinath Sridhar, Kedar Dhamdhere, Guy E. Blelloch, Eran Halperin, R. Ravi, Russell Schwartz |
| 2006 | PSB | Relaxing Haplotype Block Models for Association Testing. | Natalie Castellana, Kedar Dhamdhere, Srinath Sridhar, Russell Schwartz |
| 2005 | WSC | Implementation of a discrete event simulator for biological self-assembly systems. | Tiequan Zhang, Rori Rohlfs, Russell Schwartz |
| 2003 | RECOMB | Haplotypes and informative SNP selection algorithms: don't block out information. | Vineet Bafna, Bjarni V. Halldrsson, Russell Schwartz, Andrew G. Clark, Sorin Istrail |
| 2002 | RECOMB | Inferring Piecewise Ancestral History from Haploid Sequences. | Russell Schwartz, Andrew G. Clark, Sorin Istrail |
| 2002 | WABI | Methods for Inferring Block-Wise Ancestral History from Haploid Sequences. | Russell Schwartz, Andrew G. Clark, Sorin Istrail |
| 2001 | ESA | SNPs Problems, Complexity, and Algorithms. | Giuseppe Lancia, Vineet Bafna, Sorin Istrail, Ross Lippert, Russell Schwartz |