| 2026 | CPM | A Bitwise Approach to SCER Matching in Indeterminate Strings. | Simone Faro, Dominik Kppl, Thierry Lecroq, Francesco Pio Marino |
| 2026 | DCC | Enabling FM-Index for Elastic-Degenerate Strings via a New Min/Max Wavelet Tree. | Simone Faro, Dominik Kppl, Thierry Lecroq, Francesco Pio Marino |
| 2026 | DCC | Attractor Matching: A New Paradigm for Structural String Comparison. | Simone Faro, Dominik Kppl, Francesco Pio Marino |
| 2026 | FUN | Spells for Quantum Programmers: Expressive High-Level Commands in Qutes. | Simone Faro, Francesco Pio Marino, Gabriele Messina |
| 2026 | HPDC | Quantum LCS in Practice: Circuits, Optimizations, and Evaluation. | Riccardo Cantone, Giuseppe Falci, Simone Faro, Luigi Giannelli, Arianna Pavone, Damiano Trovato, Caterina Viola |
| 2026 | HPDC | Delta-Based Rare Pattern Discovery with Quantum Speedup. | Simone Faro, Farida Farsian, Francesco Pio Marino, Gabriele Messina, Francesco Schillir, Eva Sciacca, Fabio Vitello |
| 2026 | HPDC | Structural Parallelism in Quantum Programs. | Simone Faro, Francesco Pio Marino, Gabriele Messina |
| 2026 | HPDC | Evaluating QAOA and Quantum Annealing for Minimum Vertex Cover on NISQ Devices. | Simone Faro, Gabriele Messina, Damiano Muzzicato, Caterina Viola |
| 2026 | HPDC | Quantum Bit-Parallel Swap Matching. | Simone Faro, Francesco Pio Marino, Arianna Pavone, Simone Spina, Caterina Viola |
| 2026 | HPDC | Extracting Quantum-Ready Cores in Discrete Tomography. | Simone Faro, Arianna Pavone, Cesare Valenti |
| 2026 | HPDC | Stabilizing Grover Search via Density-Aware Phase Control. | Simone Faro, Gianmarco La Rosa, Arianna Pavone |
| 2025 | HPDC | Qutes: A High-Level Quantum Programming Language for Simplified Quantum Computing. | Simone Faro, Francesco Pio Marino, Gabriele Messina |
| 2025 | HPDC | Scaling Grover's Search for Large Solution Spaces. | Simone Faro, Francesco Pio Marino |
| 2024 | FUN | The Great Textual Hoax: Boosting Sampled String Matching with Fake Samples. | Simone Faro, Francesco Pio Marino, Antonino Andrea Moschetto, Arianna Pavone, Antonio Scardace |
| 2024 | TAMC | Quantum Path Parallelism: A Circuit-Based Approach to Text Searching. | Simone Faro, Arianna Pavone, Caterina Viola |
| 2023 | RC | Quantum String Matching Unfolded and Extended. | Domenico Cantone, Simone Faro, Arianna Pavone |
| 2020 | SOFSEM | Bit-Layers Text Encoding for Efficient Text Processing. | Domenico Cantone, Simone Faro, Stefano Scafiti |
| 2020 | SOFSEM | Fast-Insertion-Sort: a New Family of Efficient Variants of the Insertion-Sort Algorithm. | Simone Faro, Francesco Pio Marino, Stefano Scafiti |
| 2020 | WABI | Sequence Searching Allowing for Non-Overlapping Adjacent Unbalanced Translocations. | Domenico Cantone, Simone Faro, Arianna Pavone |
| 2020 | WALCOM | Fast Multiple Pattern Cartesian Tree Matching. | Geonmo Gu, Siwoo Song, Simone Faro, Thierry Lecroq, Kunsoo Park |
| 2019 | SPIRE | Fast Cartesian Tree Matching. | Siwoo Song, Cheol Ryu, Simone Faro, Thierry Lecroq, Kunsoo Park |
| 2016 | AAIM | A Very Fast String Matching Algorithm Based on Condensed Alphabets. | Simone Faro |
| 2016 | AAIM | Efficient Algorithms for the Order Preserving Pattern Matching Problem. | Simone Faro, M. Oguzhan Klekci |
| 2016 | SCN | Verifiable Pattern Matching on Outsourced Texts. | Dario Catalano, Mario Di Raimondo, Simone Faro |
| 2014 | ICCS | Automatic Extraction of Semantic Relations by Using Web Statistical Information. | Valeria Borz, Simone Faro, Arianna Pavone |
| 2013 | ALENEX | Fast Packed String Matching for Short Patterns. | Simone Faro, M. Oguzhan Klekci |
| 2012 | BIBE | Fast searching in biological sequences using multiple hash functions. | Simone Faro, Thierry Lecroq |
| 2012 | SPIRE | Fast Multiple String Matching Using Streaming SIMD Extensions Technology. | Simone Faro, M. Oguzhan Klekci |
| 2011 | CPM | Efficient Matching of Biological Sequences Allowing for Non-overlapping Inversions. | Domenico Cantone, Salvatore Cristofaro, Simone Faro |
| 2010 | CPM | A Compact Representation of Nondeterministic (Suffix) Automata for the Bit-Parallel Approach. | Domenico Cantone, Simone Faro, Emanuele Giaquinta |
| 2010 | FUN | Bit-(Parallelism) | Domenico Cantone, Simone Faro, Emanuele Giaquinta |
| 2010 | SOFSEM | Ant-CSP: An Ant Colony Optimization Algorithm for the Closest String Problem. | Simone Faro, Elisa Pappalardo |
| 2009 | CPM | An Efficient Matching Algorithm for Encoded DNA Sequences and Binary Strings. | Simone Faro, Thierry Lecroq |
| 2009 | IWOCA | A New Algorithm for Efficient Pattern Matching with Swaps. | Matteo Campanelli, Domenico Cantone, Simone Faro |
| 2009 | SOFSEM | Pattern Matching with Swaps for Short Patterns in Linear Time. | Domenico Cantone, Simone Faro |