| 2013 | WG | Parameterized and Approximation Algorithms for the MAF Problem in Multifurcating Trees. | Jianer Chen, Jia-Hao Fan, Sing-Hoi Sze |
| 2007 | RECOMB | Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences. | Yue Lu, Sing-Hoi Sze |
| 2007 | SODA | Improved algorithms for path, matching, and packing problems. | Jianer Chen, Songjian Lu, Sing-Hoi Sze, Fenghui Zhang |
| 2005 | RECOMB | A Polynomial Time Solvable Formulation of Multiple Sequence Alignment. | Sing-Hoi Sze, Yue Lu, Qingwu Yang |
| 2005 | RECOMB | Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences. | Sing-Hoi Sze, Xiaoyan Zhao |
| 2004 | WABI | Integrating Sample-Driven and Pattern-Driven Approaches in Motif Finding. | Sing-Hoi Sze, Songjian Lu, Jianer Chen |
| 2002 | ISMB | Splicing graphs and EST assembly problem. | Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner |
| 2002 | PSB | Finding Weak Motifs in DNA Sequences. | Sing-Hoi Sze, Mikhail S. Gelfand, Pavel A. Pevzner |
| 2000 | ISMB | Combinatorial Approaches to Finding Subtle Signals in DNA Sequences. | Pavel A. Pevzner, Sing-Hoi Sze |
| 1997 | RECOMB | Las Vegas algorithms for gene recognition: suboptimal and error-tolerant spliced alignment. | Sing-Hoi Sze, Pavel A. Pevzner |