Sleyman Cenk Sahinalp
Publication record assembled from the DBLP archive of ranked conferences.
Papers indexed
56
Venues
18
Active years
1994–2024
Best venue rank
A*
Where they publish
Papers
56 indexed papers, newest first.
| Year | Venue | Title | Authors |
|---|---|---|---|
| 2024 | RECOMB | Determining Optimal Placement of Copy Number Aberration Impacted Single Nucleotide Variants in a Tumor Progression History. | Chih Hao Wu, Suraj Joshi, Welles Robinson, Paul F. Robbins, Russell Schwartz, Sleyman Cenk Sahinalp, Salem Malikic |
| 2022 | RECOMB | ImmunoTyper-SR: A Novel Computational Approach for Genotyping Immunoglobulin Heavy Chain Variable Genes Using Short Read Data. | Michael K. B. Ford, Ananth Hari, Oscar Rodriguez, Junyan Xu, Justin Lack, Cihan Oguz, Yu Zhang, Sarah Weber, Mary Magliocco, Jason Barnett, Sandhya Xirasagar, Smilee Samuel, Luisa Imberti, Paolo Bonfanti, Andrea Biondi, Clifton L. Dalgard, Stephen J. Chanock, Lindsey Rosen, Steven Holland, Helen Su, Luigi Notarangelo, Uzi Vishkin, Corey Watson, Sleyman Cenk Sahinalp |
| 2019 | RECOMB | Sketching Algorithms for Genomic Data Analysis and Querying in a Secure Enclave. | Can Kockan, Kaiyuan Zhu, Natnatee Dokmai, Nikolai Karpov, M. Oguzhan Klekci, David P. Woodruff, Sleyman Cenk Sahinalp |
| 2018 | RECOMB | GTED: Graph Traversal Edit Distance. | Ali Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, Sleyman Cenk Sahinalp, Hamidreza Chitsaz |
| 2018 | RECOMB | Integrative Inference of Subclonal Tumour Evolution from Single-Cell and Bulk Sequencing Data. | Salem Malikic, Katharina Jahn, Jack Kuipers, Sleyman Cenk Sahinalp, Niko Beerenwinkel |
| 2018 | WABI | A Multi-labeled Tree Edit Distance for Comparing "Clonal Trees" of Tumor Progression. | Nikolai Karpov, Salem Malikic, Md. Khaledur Rahman, Sleyman Cenk Sahinalp |
| 2016 | RECOMB | Clonality Inference from Single Tumor Samples Using Low Coverage Sequence Data. | Nilgun Donmez, Salem Malikic, Alexander W. Wyatt, Martin E. Gleave, Colin C. Collins, Sleyman Cenk Sahinalp |
| 2015 | RECOMB | Joint Inference of Genome Structure and Content in Heterogeneous Tumor Samples. | Andrew W. McPherson, Andrew Roth, Cdric Chauve, Sleyman Cenk Sahinalp |
| 2014 | RECOMB | HIT'nDRIVE: Multi-driver Gene Prioritization Based on Hitting Time. | Raunak Shrestha, Ermin Hodzic, Jake Yeung, Kendric Wang, Thomas Sauerwald, Phuong Dao, Shawn Anderson, Himisha Beltran, Mark A. Rubin, Colin C. Collins, Gholamreza Haffari, Sleyman Cenk Sahinalp |
| 2012 | RECOMB | Discovery of Complex Genomic Rearrangements in Cancer Using High-Throughput Sequencing. | Andrew W. McPherson, Chunxiao Wu, Alexander Wyatt, Sohrab P. Shah, Colin C. Collins, Sleyman Cenk Sahinalp |
| 2012 | WABI | CLIIQ: Accurate Comparative Detection and Quantification of Expressed Isoforms in a Population. | Yen-Yi Lin, Phuong Dao, Faraz Hach, Marzieh Bakhshi, Fan Mo, Anna Lapuk, Colin C. Collins, Sleyman Cenk Sahinalp |
| 2011 | RECOMB | Simultaneous Structural Variation Discovery in Multiple Paired-End Sequenced Genomes. | Fereydoun Hormozdiari, Iman Hajirasouliha, Andrew W. McPherson, Evan E. Eichler, Sleyman Cenk Sahinalp |
| 2010 | PSB | Session Introduction. | Can Alkan, Michael Brudno, Evan E. Eichler, Maricel G. Kann, Sleyman Cenk Sahinalp |
| 2010 | PSB | Session Introduction. | Rolf Backofen, Hamidreza Chitsaz, Ivo L. Hofacker, Sleyman Cenk Sahinalp, Peter F. Stadler |
| 2010 | RECOMB | Time and Space Efficient RNA-RNA Interaction Prediction via Sparse Folding. | Raheleh Salari, Mathias Mhl, Sebastian Will, Sleyman Cenk Sahinalp, Rolf Backofen |
| 2010 | WABI | Sparsification of RNA Structure Prediction Including Pseudoknots. | Mathias Mhl, Raheleh Salari, Sebastian Will, Rolf Backofen, Sleyman Cenk Sahinalp |
| 2010 | WABI | Pair HMM Based Gap Statistics for Re-evaluation of Indels in Alignments with Affine Gap Penalties. | Alexander Schnhuth, Raheleh Salari, Sleyman Cenk Sahinalp |
| 2009 | PSB | Dense Graphlet Statistics of Protein Interaction and Random Networks. | Recep Colak, Fereydoun Hormozdiari, Flavia Moser, Alexander Schnhuth, J. Holman, Martin Ester, Sleyman Cenk Sahinalp |
| 2009 | RECOMB | Combinatorial Algorithms for Structural Variation Detection in High Throughput Sequenced Genomes. | Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, Sleyman Cenk Sahinalp |
| 2009 | WABI | biRNA: Fast RNA-RNA Binding Sites Prediction. | Hamidreza Chitsaz, Rolf Backofen, Sleyman Cenk Sahinalp |
| 2009 | WABI | Quantifying Systemic Evolutionary Changes by Color Coding Confidence-Scored PPI Networks. | Phuong Dao, Alexander Schnhuth, Fereydoun Hormozdiari, Iman Hajirasouliha, Sleyman Cenk Sahinalp, Martin Ester |
| 2009 | WABI | Fast Prediction of RNA-RNA Interaction. | Raheleh Salari, Rolf Backofen, Sleyman Cenk Sahinalp |
| 2008 | ISMB | Biomolecular network motif counting and discovery by color coding. | Noga Alon, Phuong Dao, Iman Hajirasouliha, Fereydoun Hormozdiari, Sleyman Cenk Sahinalp |
| 2008 | ISMB | Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies. | Iman Hajirasouliha, Fereydoun Hormozdiari, Sleyman Cenk Sahinalp, Inan Birol |
| 2008 | WABI | The Relation between Indel Length and Functional Divergence: A Formal Study. | Raheleh Salari, Alexander Schnhuth, Fereydoun Hormozdiari, Artem Cherkasov, Sleyman Cenk Sahinalp |
| 2007 | PSB | Comparative QSAR Analysis of Bacterial-, Fungalplant- and Human Metabolites. | Emre Karako, Sleyman Cenk Sahinalp, Artem Cherkasov |
| 2006 | ISMB | Distance based algorithms for small biomolecule classification and structural similarity search. | Emre Karako, Artem Cherkasov, Sleyman Cenk Sahinalp |
| 2006 | RECOMB | RNA Secondary Structure Prediction Via Energy Density Minimization. | Can Alkan, Emre Karako, Sleyman Cenk Sahinalp, Peter J. Unrau, H. Alexander Ebhardt, Kaizhong Zhang, Jeremy Buhler |
| 2006 | RECOMB | Not All Scale Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Emulation. | Fereydoun Hormozdiari, Petra Berenbrink, Natasa Przulj, Sleyman Cenk Sahinalp |
| 2006 | SODA | Oblivious string embeddings and edit distance approximations. | Tugkan Batu, Funda Ergn, Sleyman Cenk Sahinalp |
| 2005 | DLT | Locally Consistent Parsing and Applications to Approximate String Comparisons. | Tugkan Batu, Sleyman Cenk Sahinalp |
| 2005 | ICALP | Optimal Spaced Seeds for Faster Approximate String Matching. | Martin Farach-Colton, Gad M. Landau, Sleyman Cenk Sahinalp, Dekel Tsur |
| 2005 | RECOMB | RNA-RNA Interaction Prediction and Antisense RNA Target Search. | Can Alkan, Emre Karako, Joseph H. Nadeau, Sleyman Cenk Sahinalp, Kaizhong Zhang |
| 2005 | RECOMB | Improved Duplication Models for Proteome Network Evolution. | Grkan Bebek, Petra Berenbrink, Colin Cooper, Tom Friedetzky, Joseph H. Nadeau, Sleyman Cenk Sahinalp |
| 2004 | ICALP | Hardness of String Similarity Search and Other Indexing Problems. | Sleyman Cenk Sahinalp, Andrey Utis |
| 2004 | LATIN | Sublinear Methods for Detecting Periodic Trends in Data Streams. | Funda Ergn, S. Muthukrishnan, Sleyman Cenk Sahinalp |
| 2003 | ICDE | Distance Based Indexing for String Proximity Search. | Sleyman Cenk Sahinalp, Murat Tasan, Jai Macker, Z. Meral zsoyoglu |
| 2002 | CPM | Simple and Practical Sequence Nearest Neighbors with Block Operations. | S. Muthukrishnan, Sleyman Cenk Sahinalp |
| 2002 | CPM | Statistical Identification of Uniformly Mutated Segments within Repeats. | Sleyman Cenk Sahinalp, Evan E. Eichler, Paul W. Goldberg, Petra Berenbrink, Tom Friedetzky, Funda Ergn |
| 2002 | LATIN | An Improved Algorithm for Sequence Comparison with Block Reversals. | S. Muthukrishnan, Sleyman Cenk Sahinalp |
| 2001 | ALENEX | Biased Skip Lists for Highly Skewed Access Patterns. | Funda Ergn, Sleyman Cenk Sahinalp, Jonathan Sharp, Rakesh K. Sinha |
| 2001 | ICALP | Permutation Editing and Matching via Embeddings. | Graham Cormode, S. Muthukrishnan, Sleyman Cenk Sahinalp |
| 2001 | INFOCOM | A Dynamic Lookup Scheme for Bursty Access Patterns. | Funda Ergn, Suvo Mittra, Sleyman Cenk Sahinalp, Jonathan Sharp, Rakesh K. Sinha |
| 2001 | STOC | Biased dictionaries with fast insert/deletes. | Funda Ergn, Sleyman Cenk Sahinalp, Jonathan Sharp, Rakesh K. Sinha |
| 2000 | SODA | On the temporal HZY compression scheme. | Z. Cohen, Yossi Matias, S. Muthukrishnan, Sleyman Cenk Sahinalp, Jacob Ziv |
| 2000 | SODA | Communication complexity of document exchange. | Graham Cormode, Mike Paterson, Sleyman Cenk Sahinalp, Uzi Vishkin |
| 2000 | STOC | Approximate nearest neighbors and sequence comparison with block operations. | S. Muthukrishnan, Sleyman Cenk Sahinalp |
| 1999 | DCC | The Effect of Flexible Parsing for Dynamic Dictionary Based Data Compression. | Yossi Matias, Nasir M. Rajpoot, Sleyman Cenk Sahinalp |
| 1999 | SODA | The Complexity of Gene Placement. | Leslie Ann Goldberg, Paul W. Goldberg, Mike Paterson, Pavel A. Pevzner, Sleyman Cenk Sahinalp, Elizabeth Sweedyk |
| 1999 | SODA | On the Optimality of Parsing in Dynamic Dictionary Based Data Compression. | Yossi Matias, Sleyman Cenk Sahinalp |
| 1999 | STOC | Compact Grid Layouts of Multi-Level Networks. | S. Muthukrishnan, Mike Paterson, Sleyman Cenk Sahinalp, Torsten Suel |
| 1998 | ESA | Augmenting Suffix Trees, with Applications. | Yossi Matias, S. Muthukrishnan, Sleyman Cenk Sahinalp, Jacob Ziv |
| 1998 | SPAA | Layout of the Batcher Bitonic Sorter (Extended Abstract). | Shimon Even, S. Muthukrishnan, Mike Paterson, Sleyman Cenk Sahinalp |
| 1996 | FOCS | Efficient Approximate and Dynamic Matching of Patterns Using a Labeling Paradigm (extended abstract). | Sleyman Cenk Sahinalp, Uzi Vishkin |
| 1994 | CIAC | On a Parallel-Algorithms Method for String Matching Problems. | Sleyman Cenk Sahinalp, Uzi Vishkin |
| 1994 | STOC | Symmetry breaking for suffix tree construction. | Sleyman Cenk Sahinalp, Uzi Vishkin |