| 2015 | ICIP | Utilizing image-based features in biomedical document classification. | Kaidi Ma, Hogyeong Jeong, M. V. Rohith, Gowri Somanath, Ryan Tarpine, Kyle Schutter, Dorothea Blostein, Sorin Istrail, Chandra Kambhamettu, Hagit Shatkay |
| 2014 | PSB | Tumor Haplotype Assembly Algorithms for Cancer Genomics. | Derek Aguiar, Wendy S. W. Wong, Sorin Istrail |
| 2014 | RECOMB | Tractatus: An Exact and Subquadratic Algorithm for Inferring Identical-by-Descent Multi-shared Haplotype Tracts. | Derek Aguiar, Eric M. Morrow, Sorin Istrail |
| 2011 | PSB | Haplotype Phasing By Multi-Assembly of Shared Haplotypes: Phase-Dependent Interactions Between Rare Variants. | Bjarni V. Halldrsson, Derek Aguiar, Sorin Istrail |
| 2011 | RECOMB | Conservative Extensions of Linkage Disequilibrium Measures from Pairwise to Multi-loci and Algorithms for Optimal Tagging SNP Selection. | Ryan Tarpine, Fumei Lam, Sorin Istrail |
| 2010 | RECOMB | The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS. | Bjarni V. Halldrsson, Derek Aguiar, Ryan Tarpine, Sorin Istrail |
| 2005 | UC | Logic Functions of the Genomic Cis-regulatory Code. | Eric H. Davidson, Sorin Istrail |
| 2004 | RECOMB | Finding anchors for genomic sequence comparison. | Ross Lippert, Xiaoyue Zhao, Liliana Florea, Clark M. Mobarry, Sorin Istrail |
| 2003 | KDD | The Minimum Informative Subset Problem. | Sorin Istrail |
| 2003 | RECOMB | Haplotypes and informative SNP selection algorithms: don't block out information. | Vineet Bafna, Bjarni V. Halldrsson, Russell Schwartz, Andrew G. Clark, Sorin Istrail |
| 2002 | RECOMB | A Survey of Computational Methods for Determining Haplotypes. | Bjarni V. Halldrsson, Vineet Bafna, Nathan Edwards, Ross Lippert, Shibu Yooseph, Sorin Istrail |
| 2002 | RECOMB | Inferring Piecewise Ancestral History from Haploid Sequences. | Russell Schwartz, Andrew G. Clark, Sorin Istrail |
| 2002 | WABI | Practical Algorithms and Fixed-Parameter Tractability for the Single Individual SNP Haplotyping Problem. | Romeo Rizzi, Vineet Bafna, Sorin Istrail, Giuseppe Lancia |
| 2002 | WABI | Methods for Inferring Block-Wise Ancestral History from Haploid Sequences. | Russell Schwartz, Andrew G. Clark, Sorin Istrail |
| 2001 | ESA | SNPs Problems, Complexity, and Algorithms. | Giuseppe Lancia, Vineet Bafna, Sorin Istrail, Ross Lippert, Russell Schwartz |
| 2001 | RECOMB | 101 optimal PDB structure alignments: a branch-and-cut algorithm for the maximum contact map overlap problem. | Giuseppe Lancia, Robert D. Carr, Brian Walenz, Sorin Istrail |
| 2000 | SODA | Algorithmic strategies in combinatorial chemistry. | Deborah Goldman, Sorin Istrail, Giuseppe Lancia, Antonio Piccolboni, Brian Walenz |
| 2000 | STOC | Statistical mechanics, three-dimensionality and NP-completeness: I. Universality of intracatability for the partition function of the Ising model across non-planar surfaces (extended abstract). | Sorin Istrail |
| 1999 | CPM | Physical Mapping with Repeated Probes: The Hypergraph Superstring Problem. | Serafim Batzoglou, Sorin Istrail |
| 1999 | FOCS | Algorithmic Aspects of Protein Structure Similarity. | Deborah Goldman, Sorin Istrail, Christos H. Papadimitriou |
| 1997 | RECOMB | Lattice and off-lattice side chain models of protein folding (extended abstract): linear time structure prediction better than 86% of optimal. | William E. Hart, Sorin Istrail |
| 1996 | CPM | Invariant Patterns in Crystal Lattices: Implications for Protein Folding Algorithms (Extended Abstract). | William E. Hart, Sorin Istrail |
| 1995 | STOC | Fast protein folding in the hydrophobic-hydrophilic model within three-eights of optimal (Extended Abstract). | William E. Hart, Sorin Istrail |
| 1993 | STACS | A Non-Probabilistic Switching Lemma for the Sipser Function. | Sorin Istrail, Dejan Zivkovic |
| 1990 | FOCS | Constructing Generalized Universal Traversing Sequences of Polynomial Size for Graphs with Small Diameter (Extended Abstract) | Sorin Istrail |
| 1988 | POPL | Bisimulation Can't Be Traced. | Bard Bloom, Sorin Istrail, Albert R. Meyer |
| 1988 | STOC | Polynomial Universal Traversing Sequences for Cycles Are Constructible (Extended Abstract) | Sorin Istrail |
| 1987 | STOC | The Pagenumber of Genus g Graphs is O(g) | Lenwood S. Heath, Sorin Istrail |
| 1981 | ICALP | Chomsky-Schtzenberger Representations for Families of Languages and Grammatical Types. | Sorin Istrail |
| 1979 | ICALP | A Fixed-Point Theorem for Recursive-Enumerable Languages and Some Considerations About Fixed-Point Semantics of Monadic Programs. | Sorin Istrail |