| 2026 | ECIR | BioGraphletQA: Knowledge-Anchored Generation of Complex QA Datasets. | Richard A. A. Jonker, Brbara Maria Ribeiro de Abreu Martins, Srgio Matos |
| 2025 | ACL | A Framework for Fine-Grained Complexity Control in Health Answer Generation. | Daniel Jorge Bernardo Ferreira, Tiago Melo Almeida, Srgio Matos |
| 2025 | EPIA | SynDocDis: A Metadata-Driven Framework for Generating Synthetic Physician Discussions Using Large Language Models. | Beny Rubinstein, Srgio Matos |
| 2024 | CBMS | HealthDBFinder: a question-answering task for health database discovery. | Joo Rafael Almeida, Jorge Miguel Silva, Lus Carlos Afonso, Tiago Melo Almeida, Rui Antunes, Richard A. A. Jonker, Joo Antnio Reis, Dimitri Alexandre da Silva, Srgio Matos, Jos Lus Oliveira |
| 2024 | DaWaK | Analyzing a Decade of Evolution: Trends in Natural Language Processing. | Richard A. A. Jonker, Tiago Melo Almeida, Srgio Matos |
| 2024 | EACL | Exploring efficient zero-shot synthetic dataset generation for Information Retrieval. | Tiago Melo Almeida, Srgio Matos |
| 2024 | ECIR | SPARe: Supercharged Lexical Retrievers on GPU with Sparse Kernels. | Tiago Melo Almeida, Srgio Matos |
| 2023 | EPIA | DyPrune: Dynamic Pruning Rates for Neural Networks. | Richard Adolph Aires Jonker, Roshan Poudel, Olga Fajarda, Jos Lus Oliveira, Rui Pedro Lopes, Srgio Matos |
| 2022 | IBPRIA | Feature-Based Classification of Archaeal Sequences Using Compression-Based Methods. | Jorge Miguel Silva, Diogo Pratas, Tnia Caetano, Srgio Matos |
| 2022 | PACBB | The NAD Interactome, Identification of Putative New NAD-Binding Proteins. | Sara Duarte-Pereira, Srgio Matos, Jos Lus Oliveira, Raquel M. Silva |
| 2021 | CBMS | Patient Trajectory Modelling in Longitudinal Data: A Review on Existing Solutions. | Joo Figueira Silva, Srgio Matos |
| 2021 | EACL | Benchmarking a transformer-FREE model for ad-hoc retrieval. | Tiago Melo Almeida, Srgio Matos |
| 2020 | ECIR | Calling Attention to Passages for Biomedical Question Answering. | Tiago Melo Almeida, Srgio Matos |
| 2020 | ECIR | Understanding Depression from Psycholinguistic Patterns in Social Media Texts. | Alina Trifan, Rui Antunes, Srgio Matos, Jos Lus Oliveira |
| 2020 | EMNLP | Frugal neural reranking: evaluation on the Covid-19 literature. | Tiago Melo Almeida, Srgio Matos |
| 2020 | SAC | Rule-based extraction of family history information from clinical notes. | Joo Rafael Almeida, Srgio Matos |
| 2020 | SAC | Evaluating semantic textual similarity in clinical sentences using deep learning and sentence embeddings. | Rui Antunes, Joo Figueira Silva, Srgio Matos |
| 2018 | CBMS | Ejection Fraction Classification in Transthoracic Echocardiography Using a Deep Learning Approach. | Joo Figueira Silva, Jorge Miguel Silva, Antnio Guerra, Srgio Matos, Carlos Costa |
| 2017 | PACBB | Biomedical Word Sense Disambiguation with Word Embeddings. | Rui Antunes, Srgio Matos |
| 2017 | PACBB | Improving Document Prioritization for Protein-Protein Interaction Extraction Using Shallow Linguistics and Word Embeddings. | Srgio Matos |
| 2015 | IIWAS | Ann2RDF: moving annotations to semantic web. | Pedro Sernadela, Srgio Matos, Jos Lus Oliveira |
| 2014 | DCAI | Extracting Sentences Describing Biomolecular Events from the Biomedical Literature. | Tiago Nunes, Srgio Matos, Jos Lus Oliveira |
| 2013 | DCAI | Structuring and Exploring the Biomedical Literature Using Latent Semantics. | Srgio Matos, Hugo Arajo, Jos Lus Oliveira |
| 2013 | PACBB | Analysing Relevant Diseases from Iberian Tweets. | Vctor M. Prieto, Srgio Matos, Manuel lvarez, Fidel Cacheda, Jos Lus Oliveira |
| 2011 | PACBB | Prioritizing Literature Search Results Using a Training Set of Classified Documents. | Srgio Matos, Jos Lus Oliveira |
| 2010 | IC3K | Recognition of Gene/Protein Names using Conditional Random Fields. | David Campos, Srgio Matos, Jos Lus Oliveira |
| 2009 | EPIA | Syntactic Parsing for Bio-molecular Event Detection from Scientific Literature. | Srgio Matos, Anabela Barreiro, Jos Lus Oliveira |