| 2017 | COCOON | Optimal Online Two-Way Trading with Bounded Number of Transactions. | Stanley P. Y. Fung |
| 2015 | Algosensors | Maximizing Throughput in Energy-Harvesting Sensor Nodes. | Stanley P. Y. Fung |
| 2013 | TAMC | Temperature Aware Online Algorithms for Minimizing Flow Time. | Martin Birks, Stanley P. Y. Fung |
| 2011 | AAIM | Online Algorithms for Maximizing Weighted Throughput of Unit Jobs with Temperature Constraints. | Martin Birks, Daniel Cole, Stanley P. Y. Fung, Huichao Xue |
| 2011 | AAIM | Temperature Aware Online Algorithms for Scheduling Equal Length Jobs. | Martin Birks, Stanley P. Y. Fung |
| 2010 | COCOON | Online Preemptive Scheduling with Immediate Decision or Notification and Penalties. | Stanley P. Y. Fung |
| 2010 | TAMC | Temperature Aware Online Scheduling with a Low Cooling Factor. | Martin Birks, Stanley P. Y. Fung |
| 2008 | WAOA | Improved Randomized Online Scheduling of Unit Length Intervals and Jobs. | Stanley P. Y. Fung, Chung Keung Poon, Feifeng Zheng |
| 2007 | COCOON | Online Interval Scheduling: Randomized and Multiprocessor Cases. | Stanley P. Y. Fung, Chung Keung Poon, Feifeng Zheng |
| 2006 | COCOON | Improved On-Line Broadcast Scheduling with Deadlines. | Feifeng Zheng, Stanley P. Y. Fung, Wun-Tat Chan, Francis Y. L. Chin, Chung Keung Poon, Prudence W. H. Wong |
| 2006 | WABI | Linear-Time Haplotype Inference on Pedigrees Without Recombinations. | Bethany Man-Yee Chan, Joseph Wun-Tat Chan, Francis Y. L. Chin, Stanley P. Y. Fung, Ming-Yang Kao |
| 2005 | ISAAC | Efficient Algorithms for Finding a Longest Common Increasing Subsequence. | Wun-Tat Chan, Yong Zhang, Stanley P. Y. Fung, Deshi Ye, Hong Zhu |
| 2004 | STACS | Online Competitive Algorithms for Maximizing Weighted Throughput of Unit Jobs. | Yair Bartal, Francis Y. L. Chin, Marek Chrobak, Stanley P. Y. Fung, Wojciech Jawor, Ron Lavi, Jir Sgall, Toms Tich |
| 2003 | COCOON | Improved Competitive Algorithms for Online Scheduling with Partial Job Values. | Francis Y. L. Chin, Stanley P. Y. Fung |
| 2001 | ISAAC | Approximation of Minimum Triangulation for Polyhedron with Bounded Degrees. | Francis Y. L. Chin, Stanley P. Y. Fung |
| 2001 | SODA | Approximation for minimum triangulation of convex polyhedra. | Francis Y. L. Chin, Stanley P. Y. Fung, Cao An Wang |