| 2018 | GECCO | A parallel island model for biogeography-based classification rule mining in julia. | Samuel Ebert, Effat Farhana, Steffen Heber |
| 2017 | GECCO | Biogeography-based rule mining for classification. | Effat Farhana, Steffen Heber |
| 2007 | BIBE | Quality Assessment of Affymetrix GeneChip Data using the EM Algorithm and a Naive Bayes Classifier. | Brian E. Howard, Beate Sick, Imara Perera, Yang Ju Im, Heike Winter-Sederoff, Steffen Heber |
| 2007 | BIBE | Large-scale Discovery of Regulatory Motifs Involved in Alternative Splicing. | Sihui Zhao, Jihye Kim, Steffen Heber |
| 2007 | ICDM | Statistical Approaches to Identifying Androgen Response Elements. | Li Li, Steffen Heber, Qiang Zhang, Melvin E. Andersen |
| 2002 | ECCB | Common intervals and sorting by reversals: a marriage of necessity. | Anne Bergeron, Steffen Heber, Jens Stoye |
| 2002 | ISMB | Splicing graphs and EST assembly problem. | Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner |
| 2001 | CPM | Finding All Common Intervals of k Permutations. | Steffen Heber, Jens Stoye |
| 2001 | WABI | Algorithms for Finding Gene Clusters. | Steffen Heber, Jens Stoye |
| 2000 | RECOMB | Contig selection in physical mapping. | Steffen Heber, Jens Stoye, Jrg D. Hoheisel, Martin Vingron |