| 2007 | DNA | Autonomous Programmable Nanorobotic Devices Using DNAzymes. | John H. Reif, Sudheer Sahu |
| 2006 | DNA | Design and Simulation of Self-repairing DNA Lattices. | Urmi Majumder, Sudheer Sahu, Thomas H. LaBean, John H. Reif |
| 2006 | DNA | Capabilities and Limits of Compact Error Resilience Methods for Algorithmic Self-assembly in Two and Three Dimensions. | Sudheer Sahu, John H. Reif |
| 2006 | DNA | A Framework for Modeling DNA Based Molecular Systems. | Sudheer Sahu, Bei Wang, John H. Reif |
| 2005 | DNA | Complexity of Graph Self-assembly in Accretive Systems and Self-destructible Systems. | John H. Reif, Sudheer Sahu, Peng Yin |
| 2005 | DNA | A Self-assembly Model of Time-Dependent Glue Strength. | Sudheer Sahu, Peng Yin, John H. Reif |
| 2005 | DNA | Design of Autonomous DNA Cellular Automata. | Peng Yin, Sudheer Sahu, Andrew J. Turberfield, John H. Reif |
| 2004 | DNA | Compact Error-Resilient Computational DNA Tiling Assemblies. | John H. Reif, Sudheer Sahu, Peng Yin |
| 2004 | DNA | Design of an Autonomous DNA Nanomechanical Device Capable of Universal Computation and Universal Translational Motion. | Peng Yin, Andrew J. Turberfield, Sudheer Sahu, John H. Reif |