| 2019 | RECOMB | RENET: A Deep Learning Approach for Extracting Gene-Disease Associations from Literature. | Ye Wu, Ruibang Luo, Henry C. M. Leung, Hing-Fung Ting, Tak Wah Lam |
| 2015 | CIAC | Scheduling with Gaps: New Models and Algorithms. | Marek Chrobak, Mordecai J. Golin, Tak Wah Lam, Dorian Nogneng |
| 2015 | CPM | Dictionary Matching with Uneven Gaps. | Wing-Kai Hon, Tak Wah Lam, Rahul Shah, Sharma V. Thankachan, Hing-Fung Ting, Yilin Yang |
| 2013 | SPAA | Nonclairvoyant sleep management and flow-time scheduling on multiple processors. | Sze-Hang Chan, Tak Wah Lam, Lap-Kei Lee, Jianqiao Zhu |
| 2012 | SPAA | Non-clairvoyant weighted flow time scheduling with rejection penalty. | Ho-Leung Chan, Sze-Hang Chan, Tak Wah Lam, Lap-Kei Lee, Jianqiao Zhu |
| 2011 | ICALP | Sleep Management on Multiple Machines for Energy and Flow Time. | Sze-Hang Chan, Tak Wah Lam, Lap-Kei Lee, Chi-Man Liu, Hing-Fung Ting |
| 2011 | ISAAC | Edit Distance to Monotonicity in Sliding Windows. | Ho-Leung Chan, Tak Wah Lam, Lap-Kei Lee, Jiangwei Pan, Hing-Fung Ting, Qin Zhang |
| 2011 | STACS | Scheduling for Weighted Flow Time and Energy with Rejection Penalty. | Sze-Hang Chan, Tak Wah Lam, Lap-Kei Lee |
| 2011 | WAOA | Non-clairvoyant Weighted Flow Time Scheduling on Different Multi-processor Models. | Jianqiao Zhu, Ho-Leung Chan, Tak Wah Lam |
| 2010 | AAIM | Indexing Similar DNA Sequences. | Songbo Huang, Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Siu-Ming Yiu |
| 2010 | ESA | Non-clairvoyant Speed Scaling for Weighted Flow Time. | Sze-Hang Chan, Tak Wah Lam, Lap-Kei Lee |
| 2010 | STACS | Continuous Monitoring of Distributed Data Streams over a Time-based Sliding Window. | Ho-Leung Chan, Tak Wah Lam, Lap-Kei Lee, Hing-Fung Ting |
| 2010 | WAOA | Tradeoff between Energy and Throughput for Online Deadline Scheduling. | Ho-Leung Chan, Tak Wah Lam, Rongbin Li |
| 2010 | WAOA | Online Tracking of the Dominance Relationship of Distributed Multi-dimensional Data. | Tak Wah Lam, Chi-Man Liu, Hing-Fung Ting |
| 2009 | ICALP | Sleep with Guilt and Work Faster to Minimize Flow Plus Energy. | Tak Wah Lam, Lap-Kei Lee, Hing-Fung Ting, Isaac Kar-Keung To, Prudence W. H. Wong |
| 2009 | ISAAC | Succinct Index for Dynamic Dictionary Matching. | Wing-Kai Hon, Tak Wah Lam, Rahul Shah, Siu-Lung Tam, Jeffrey Scott Vitter |
| 2009 | STACS | Nonclairvoyant Speed Scaling for Flow and Energy. | Ho-Leung Chan, Jeff Edmonds, Tak Wah Lam, Lap-Kei Lee, Alberto Marchetti-Spaccamela, Kirk Pruhs |
| 2009 | SPIRE | Succinct Text Indexing with Wildcards. | Alan Tam, Edward Wu, Tak Wah Lam, Siu-Ming Yiu |
| 2009 | WABI | Structural Alignment of RNA with Complex Pseudoknot Structure. | Thomas K. F. Wong, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu |
| 2009 | WAOA | Approximating Frequent Items in Asynchronous Data Stream over a Sliding Window. | Ho-Leung Chan, Tak Wah Lam, Lap-Kei Lee, Hing-Fung Ting |
| 2008 | APBC | A Memory Efficient Algorithm for Structural Alignment of RNAs with Embedded Simple Pseudoknots. | Thomas K. F. Wong, Y. S. Chiu, Tak Wah Lam, Siu-Ming Yiu |
| 2008 | DCC | Compressed Index for Dictionary Matching. | Wing-Kai Hon, Tak Wah Lam, Rahul Shah, Siu-Lung Tam, Jeffrey Scott Vitter |
| 2008 | ESA | Speed Scaling Functions for Flow Time Scheduling Based on Active Job Count. | Tak Wah Lam, Lap-Kei Lee, Isaac Kar-Keung To, Prudence W. H. Wong |
| 2008 | ICALP | Scheduling for Speed Bounded Processors. | Nikhil Bansal, Ho-Leung Chan, Tak Wah Lam, Lap-Kei Lee |
| 2008 | SPAA | Competitive non-migratory scheduling for flow time and energy. | Tak Wah Lam, Lap-Kei Lee, Isaac Kar-Keung To, Prudence W. H. Wong |
| 2007 | AAIM | Efficiency of Data Distribution in BitTorrent-Like Systems. | Ho-Leung Chan, Tak Wah Lam, Prudence W. H. Wong |
| 2007 | COCOA | An Experimental Study of Compressed Indexing and Local Alignments of DNA. | Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Chi-Kwong Wong, Siu-Ming Yiu |
| 2007 | CPM | Cache-Oblivious Index for Approximate String Matching. | Wing-Kai Hon, Tak Wah Lam, Rahul Shah, Siu-Lung Tam, Jeffrey Scott Vitter |
| 2007 | ISAAC | Energy Efficient Deadline Scheduling in Two Processor Systems. | Tak Wah Lam, Lap-Kei Lee, Isaac Kar-Keung To, Prudence W. H. Wong |
| 2007 | ISAAC | Space Efficient Indexes for String Matching with Don't Cares. | Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Siu-Ming Yiu |
| 2007 | SODA | Energy efficient online deadline scheduling. | Ho-Leung Chan, Wun-Tat Chan, Tak Wah Lam, Lap-Kei Lee, Kin-Sum Mak, Prudence W. H. Wong |
| 2007 | TAMC | Online Deadline Scheduling with Bounded Energy Efficiency. | Joseph Wun-Tat Chan, Tak Wah Lam, Kin-Sum Mak, Prudence W. H. Wong |
| 2006 | APBC | A More Accurate and Efficient Whole Genome Phylogeny. | P. Y. Chan, Tak Wah Lam, Siu-Ming Yiu |
| 2006 | CPM | A Linear Size Index for Approximate Pattern Matching. | Ho-Leung Chan, Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Swee-Seong Wong |
| 2006 | ESA | Compressed Indexes for Approximate String Matching. | Ho-Leung Chan, Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Swee-Seong Wong |
| 2006 | SODA | Extra unit-speed machines are almost as powerful as speedy machines for competitive flow time scheduling. | Ho-Leung Chan, Tak Wah Lam, Kin-Shing Liu |
| 2005 | APBC | Allowing mismatches in anchors for wholw genome alignment: Generation and effectiveness. | Siu-Ming Yiu, P. Y. Chan, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting, Prudence W. H. Wong |
| 2005 | ICALP | Dynamic Bin Packing of Unit Fractions Items. | Wun-Tat Chan, Tak Wah Lam, Prudence W. H. Wong |
| 2005 | ISAAC | Improved Approximate String Matching Using Compressed Suffix Data Structures. | Tak Wah Lam, Wing-Kin Sung, Swee-Seong Wong |
| 2005 | MFCS | Reconstructing an Ultrametric Galled Phylogenetic Network from a Distance Matrix. | Ho-Leung Chan, Jesper Jansson, Tak Wah Lam, Siu-Ming Yiu |
| 2005 | MFCS | New Resource Augmentation Analysis of the Total Stretch of SRPT and SJF in Multiprocessor Scheduling. | Wun-Tat Chan, Tak Wah Lam, Kin-Shing Liu, Prudence W. H. Wong |
| 2005 | SODA | Dynamic dictionary matching and compressed suffix trees. | Ho-Leung Chan, Wing-Kai Hon, Tak Wah Lam, Kunihiko Sadakane |
| 2004 | ALENEX | Practical aspects of Compressed Suffix Arrays and FM-Index in Searching DNA Sequences. | Wing-Kai Hon, Tak Wah Lam, Wing-Kin Sung, Wai-Leuk Tse, Chi-Kwong Wong, Siu-Ming Yiu |
| 2004 | APBC | Filtering of Ineffective siRNAs and Improved siRNA Design Tool. | Prudence W. H. Wong, Tak Wah Lam, Y. C. Mui, Siu-Ming Yiu, Hsiang-fu Kung, Marie C. M. Lin, Y. T. Cheung |
| 2004 | BIBE | A Mutation-Sensitive Approach for Locating Conserved Gene Pairs between Related Species. | Ho-Leung Chan, Tak Wah Lam, Wing-Kin Sung, Prudence W. H. Wong, Siu-Ming Yiu |
| 2004 | COCOON | New Results on On-Demand Broadcasting with Deadline via Job Scheduling with Cancellation. | Wun-Tat Chan, Tak Wah Lam, Hing-Fung Ting, Prudence W. H. Wong |
| 2004 | CPM | Compressed Index for a Dynamic Collection of Texts. | Ho-Leung Chan, Wing-Kai Hon, Tak Wah Lam |
| 2004 | CPM | Approximate String Matching Using Compressed Suffix Arrays. | Trinh N. D. Huynh, Wing-Kai Hon, Tak Wah Lam, Wing-Kin Sung |
| 2004 | DCC | Compressed Index for Dynamic Text. | Wing-Kai Hon, Tak Wah Lam, Kunihiko Sadakane, Wing-Kin Sung, Siu-Ming Yiu |
| 2004 | RECOMB | Finding motifs for insufficient number of sequences with strong binding to transcription facto. | Francis Y. L. Chin, Henry C. M. Leung, Siu-Ming Yiu, Tak Wah Lam, Roni Rosenfeld, Wai Wan Tsang, David K. Smith, Y. Jiang |
| 2004 | SODA | Non-migratory online deadline scheduling on multiprocessors. | Ho-Leung Chan, Tak Wah Lam, Kar-Keung To |
| 2003 | CIAC | On-Line Stream Merging, Max Span, and Min Coverage. | Wun-Tat Chan, Tak Wah Lam, Hing-Fung Ting, Prudence W. H. Wong |
| 2003 | ISAAC | Constructing Compressed Suffix Arrays with Large Alphabets. | Wing-Kai Hon, Tak Wah Lam, Kunihiko Sadakane, Wing-Kin Sung |
| 2003 | ISAAC | Efficient Algorithms for Optimizing Whole Genome Alignment with Noise. | Tak Wah Lam, N. Lu, Hing-Fung Ting, Prudence W. H. Wong, Siu-Ming Yiu |
| 2002 | COCOON | A Space and Time Efficient Algorithm for Constructing Compressed Suffix Arrays. | Tak Wah Lam, Kunihiko Sadakane, Wing-Kin Sung, Siu-Ming Yiu |
| 2002 | MFCS | Competitive Analysis of On-line Stream Merging Algorithms. | Wun-Tat Chan, Tak Wah Lam, Hing-Fung Ting, Prudence W. H. Wong |
| 2002 | STOC | A unified analysis of hot video schedulers. | Wun-Tat Chan, Tak Wah Lam, Hing-Fung Ting, Prudence W. H. Wong |
| 2002 | SPAA | Extra processors versus future information in optimal deadline scheduling. | Chiu-Yuen Koo, Tak Wah Lam, Tsuen-Wan Ngan, Kar-Keung To |
| 2001 | BIBE | Predicting RNA Secondary Structures with Arbitrary Pseudoknots by Maximizing the Number of Stacking Pairs. | Samuel Ieong, Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu |
| 2001 | COCOON | Improved On-Line Stream Merging: From a Restricted to a General Setting. | Wun-Tat Chan, Tak Wah Lam, Hing-Fung Ting, Prudence W. H. Wong |
| 2001 | MFCS | On-Line Scheduling with Tight Deadlines. | Chiu-Yuen Koo, Tak Wah Lam, Tsuen-Wan Ngan, Kar-Keung To |
| 2001 | SODA | Performance guarentee for online deadline scheduling in the presence of overload. | Tak Wah Lam, Kar-Keung To |
| 2000 | CPM | A Faster and Unifying Algorithm for Comparing Trees. | Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting |
| 2000 | ISAAC | Improved Phylogeny Comparisons: Non-shared Edges, Nearest Neighbor Interchanges, and Subtree Transfers. | Wing-Kai Hon, Ming-Yang Kao, Tak Wah Lam |
| 2000 | ISAAC | Unbalanced and Hierarchical Bipartite Matchings with Applications to Labeled Tree Comparison. | Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting |
| 1999 | CIKM | Requirement-Based Data Cube Schema Design. | David Wai-Lok Cheung, Bo Zhou, Ben Kao, Hongjun Lu, Tak Wah Lam, Hing-Fung Ting |
| 1999 | COCOON | Improving Parallel Computation with Fast Integer Sorting. | Ka Wong Chong, Yijie Han, Yoshihide Igarashi, Tak Wah Lam |
| 1999 | COCOON | Approximating the Nearest Neighbor Interchange Distance for Evolutionary Trees with Non-uniform Degrees. | Wing-Kai Hon, Tak Wah Lam |
| 1999 | ESA | A Decomposition Theorem for Maximum Weight Bipartite Matchings with Applications to Evolutionary Trees. | Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting |
| 1999 | SODA | On the Parallel Time Complexity of Undirected Connectivity and Minimum Spanning Trees. | Ka Wong Chong, Yijie Han, Tak Wah Lam |
| 1999 | SODA | Trade-offs Between Speed and Processor in Hard-Deadline Scheduling. | Tak Wah Lam, Kar-Keung To |
| 1998 | ISAAC | Selecting the k Largest Elements with Parity Tests. | Tak Wah Lam, Hing-Fung Ting |
| 1998 | SODA | Optimal Edge Ranking of Trees in Linear Time. | Tak Wah Lam, Fung Ling Yue |
| 1997 | ISAAC | All-Cavity Maximum Matchings. | Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting |
| 1997 | STOC | General Techniques for Comparing Unrooted Evolutionary Trees. | Ming-Yang Kao, Tak Wah Lam, Teresa M. Przytycka, Wing-Kin Sung, Hing-Fung Ting |
| 1996 | ISAAC | Two-Dimensional Dynamic Dictionary Matching. | Ying Choi, Tak Wah Lam |
| 1996 | ISAAC | Towards More Precise Parallel Biconnectivity Approximation. | Ka Wong Chong, Tak Wah Lam |
| 1996 | SODA | Improving Biconnectivity Approximation via Local Optimization. | Ka Wong Chong, Tak Wah Lam |
| 1995 | COCOON | Two-Dimensional Pattern Matching on a Dynamic Library of Texts. | Ying Choi, Tak Wah Lam |
| 1995 | SPAA | Approximating Biconnectivity in Parallel. | Ka Wong Chong, Tak Wah Lam |
| 1994 | CIAC | On Set Equality-Testing. | Tak Wah Lam, Ka Hing Lee |
| 1993 | SODA | Finding Connected Components in O(log n log log n) Time on the EREW PRAM. | Ka Wong Chong, Tak Wah Lam |
| 1992 | ISAAC | The Implicit Dictionary Problem Revisited. | Tak Wah Lam, Ka Hing Lee |
| 1989 | ICPP | An Optimal EREW Parallel Algorithm for Parenthesis Matching. | Wai Wan Tsang, Tak Wah Lam, Francis Y. L. Chin |
| 1989 | STOC | Tradeoffs Between Communication and Space | Tak Wah Lam, Prasoon Tiwari, Martin Tompa |
| 1989 | SPAA | The Power of Parallel Pointer Manipulation. | Tak Wah Lam, Walter L. Ruzzo |