| 2025 | RECOMB | A Partition Function Algorithm to Evaluate Inferred Subclonal Structures in Single-Cell Sequencing Data. | Farid Rashidi Mehrabadi, Erfan Sadeqi Azer, John D. Bridgers, Eva Prez-Guijarro, Kerrie Marie, Howard H. Yang, Charli Gruen, Chih Hao Wu, Welles Robinson, Huaitian Liu, Can Kizilkale, Michael C. Kelly, Cari Smith, Sung Chin, Jessica Ebersole, Sandra Burkett, Aydin Bulu, Maxwell P. Lee, Erin K. Molloy, Teresa M. Przytycka, Glenn Merlino, Chi-Ping Day, Salem Malikic, Funda Ergn, S. Cenk Sahinalp |
| 2025 | WABI | Improved Algorithms for Bi-Partition Function Computation. | John D. Bridgers, Jan Hoinka, S. Cenk Sahinalp, Salem Malikic, Teresa M. Przytycka, Funda Ergn |
| 2025 | WABI | Mutational Signature Refitting on Sparse Pan-Cancer Data. | Gal Gilad, Teresa M. Przytycka, Roded Sharan |
| 2023 | WABI | Algorithmic Approaches to Study Mutational Processes in Cancer (Invited Talk). | Teresa M. Przytycka |
| 2020 | PSB | Session Introduction. | Mark D. M. Leiserson, Teresa M. Przytycka, Roded Sharan |
| 2020 | PSB | DNA Repair Footprint Uncovers Contribution of DNA Repair Mechanism to MutationalSignatures. | Damian Wjtowicz, Mark D. M. Leiserson, Roded Sharan, Teresa M. Przytycka |
| 2020 | RECOMB | Reconstruction of Gene Regulatory Networks by Integrating Biological Model and a Recommendation System. | Yijie Wang, Justin M. Fear, Isabelle Berger, Hangnoh Lee, Brian Oliver, Teresa M. Przytycka |
| 2019 | RECOMB | A Sticky Multinomial Mixture Model of Strand-Coordinated Mutational Processes in Cancer. | Itay Sason, Damian Wjtowicz, Welles Robinson, Mark D. M. Leiserson, Teresa M. Przytycka, Roded Sharan |
| 2019 | RECOMB | Accurate Sub-population Detection and Mapping Across Single Cell Experiments with PopCorn. | Yijie Wang, Jan Hoinka, Teresa M. Przytycka |
| 2018 | RECOMB | AptaBlocks: Accelerating the Design of RNA-Based Drug Delivery Systems. | Yijie Wang, Jan Hoinka, Piotr Swiderski, Teresa M. Przytycka |
| 2017 | RECOMB | BeWith: A Between-Within Method for Module Discovery in Cancer using Integrated Analysis of Mutual Exclusivity, Co-occurrence and Functional Interactions (Extended Abstract). | Phuong Dao, Yoo-Ah Kim, Sanna Madan, Roded Sharan, Teresa M. Przytycka |
| 2017 | RECOMB | NetREX: Network Rewiring Using EXpression - Towards Context Specific Regulatory Networks. | Yijie Wang, Dong-Yeon Cho, Hangnoh Lee, Brian Oliver, Teresa M. Przytycka |
| 2016 | RECOMB | AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments. | Phuong Dao, Jan Hoinka, Yijie Wang, Mayumi Takahashi, Jiehua Zhou, Fabrizio Costa, John Rossi, John Burnett, Rolf Backofen, Teresa M. Przytycka |
| 2014 | RECOMB | AptaCluster - A Method to Cluster HT-SELEX Aptamer Pools and Lessons from Its Application. | Jan Hoinka, Alexey Berezhnoy, Zuben E. Sauna, Eli Gilboa, Teresa M. Przytycka |
| 2013 | PSB | Modeling cell heterogeneity: from single-cell variations to mixed cells populations. | Eric Batchelor, Maricel G. Kann, Teresa M. Przytycka, Benjamin J. Raphael, Damian Wjtowicz |
| 2013 | PSB | Module Cover - A New Approach to Genotype-Phenotype Studies. | Yoo-Ah Kim, Raheleh Salari, Stefan Wuchty, Teresa M. Przytycka |
| 2013 | RECOMB | Dissecting Cancer Heterogeneity with a Probabilistic Genotype-Phenotype Model. | Dong-Yeon Cho, Teresa M. Przytycka |
| 2012 | RECOMB | Detecting SNP-Induced Structural Changes in RNA: Application to Disease Studies. | Raheleh Salari, Chava Kimchi-Sarfaty, Michael M. Gottesman, Teresa M. Przytycka |
| 2010 | PSB | Session Introduction. | Tanya Y. Berger-Wolf, Teresa M. Przytycka, Mona Singh, Donna K. Slonim |
| 2010 | RECOMB | Simultaneous Identification of Causal Genes and Dys-Regulated Pathways in Complex Diseases. | Yoo-Ah Kim, Stefan Wuchty, Teresa M. Przytycka |
| 2009 | PSB | Session Introduction. | Tanya Y. Berger-Wolf, Teresa M. Przytycka, Mona Singh |
| 2007 | RECOMB | A Rigorous Analysis of the Pattern of Intron Conservation Supports the | Jie Zheng, Igor B. Rogozin, Eugene V. Koonin, Teresa M. Przytycka |
| 2007 | WABI | Bringing Folding Pathways into Strand Pairing Prediction. | Jieun K. Jeong, Piotr Berman, Teresa M. Przytycka |
| 2006 | ICCS | Chordal Graphs in Computational Biology - New Insights and Applications. | Teresa M. Przytycka |
| 2006 | RECOMB | An Important Connection Between Network Motifs and Parsimony Models. | Teresa M. Przytycka |
| 2005 | ISMB | Predicting protein-protein interaction by searching evolutionary tree automorphism space. | Raja Jothi, Maricel G. Kann, Teresa M. Przytycka |
| 2005 | RECOMB | Graph Theoretical Insights into Evolution of Multidomain Proteins. | Teresa M. Przytycka, George B. Davis, Nan Song, Dannie Durand |
| 2005 | RECOMB | Decomposition of Overlapping Protein Complexes: A Graph Theoretical Method for Analyzing Static and Dynamic Protein Associations. | Elena Zotenko, Katia S. Guimares, Raja Jothi, Teresa M. Przytycka |
| 1999 | WADS | On an Optimal Split Tree Problem. | S. Rao Kosaraju, Teresa M. Przytycka, Ryan S. Borgstrom |
| 1997 | STOC | General Techniques for Comparing Unrooted Evolutionary Trees. | Ming-Yang Kao, Tak Wah Lam, Teresa M. Przytycka, Wing-Kin Sung, Hing-Fung Ting |
| 1996 | ICALP | On the Complexity of String Folding. | Mike Paterson, Teresa M. Przytycka |
| 1995 | ESA | Computing the Agreement of Trees with Bounded Degrees. | Martin Farach, Teresa M. Przytycka, Mikkel Thorup |
| 1995 | GD | Grid Intersection and Box Intersection Graphs on Surfaces (Extended Abstract). | Jan Kratochvl, Teresa M. Przytycka |
| 1994 | ICALP | The Optimal Alphabetic Tree Problem Revisited. | Teresa M. Przytycka, Lawrence L. Larmore |
| 1993 | SPAA | Parallel Construction of Optimal Alphabetic Trees. | Lawrence L. Larmore, Teresa M. Przytycka, Wojciech Rytter |
| 1991 | SPAA | Parallel Construction of Trees with Optimal Weighted Path Length. | Lawrence L. Larmore, Teresa M. Przytycka |
| 1990 | SPAA | Parallel Construction of near Optimal binary Trees. | David G. Kirkpatrick, Teresa M. Przytycka |