| 2007 | BIBE | Database Approaches and Data Representation in Structural Bioinformatics. | Kreshna Gopal, James C. Sacchettini, Thomas R. Ioerger |
| 2007 | FlAIRS | Intention Is Commitment with Expectation. | James Creel, Christopher Menzel, Thomas R. Ioerger |
| 2007 | ICDM | Distance Metric Learning through Optimization of Ranking. | Kreshna Gopal, Thomas R. Ioerger |
| 2006 | FlAIRS | Coalition Formation Meets Information Theory. | Victor Palmer, Thomas R. Ioerger |
| 2005 | AAAI | TEXTAL™: Automated Crystallographic Protein Structure Determination. | Kreshna Gopal, Tod D. Romo, Erik McKee, Kevin Childs, Lalji Kanbi, Reetal Pai, Jacob N. Smith, James C. Sacchettini, Thomas R. Ioerger |
| 2005 | SMC | Decision-theoretic proactive communication in multiagent teamwork. | Yu Zhang, Thomas R. Ioerger, Richard A. Volz |
| 2005 | SAC | Forming resource-sharing coalitions: a distributed resource allocation mechanism for self-interested agents in computational grids. | Linli He, Thomas R. Ioerger |
| 2004 | FlAIRS | Reasoning about Beliefs, Observability, and Information Exchange in Teamwork. | Thomas R. Ioerger |
| 2004 | ICMLA | Efficient retrieval of electron density patterns for modeling proteins by X-ray crystallography. | Kreshna Gopal, Tod D. Romo, James C. Sacchettini, Thomas R. Ioerger |
| 2004 | SAC | A decision-theoretic approach for designing proactive communication in multi-agent teamwork. | Yu Zhang, Richard A. Volz, Thomas R. Ioerger, John Yen |
| 2003 | CIKM | Tracking changes in user interests with a few relevance judgments. | Dwi H. Widyantoro, Thomas R. Ioerger, John Yen |
| 2003 | IAAI | TEXTAL | Kreshna Gopal, Reetal Pai, Thomas R. Ioerger, Tod D. Romo, James C. Sacchettini |
| 2003 | PSB | MOPAC: MOtif Finding by Preprocessing and Agglomerative Clustering from Microarrays. | R. Ganesh, Deborah A. Siegele, Thomas R. Ioerger |
| 2002 | ICDM | An Incremental Approach to Building a Cluster Hierarchy. | Dwi H. Widyantoro, Thomas R. Ioerger, John Yen |
| 2002 | ICPR | Extracting Fractal Features for Analyzing Protein Structure. | Yu Tao, Thomas R. Ioerger, James C. Sacchettini |
| 2002 | SEKE | Modeling and verifying multi-agent behaviors using predicate/transition nets. | Dianxiang Xu, Richard A. Volz, Thomas R. Ioerger, John Yen |
| 2001 | ICIP | Extraction of rotation invariant signature based on fractal geometry. | Yu Tao, Thomas R. Ioerger, Yuan Yan Tang |
| 2001 | IJCAI | CAST: Collaborative Agents for Simulating Teamwork. | John Yen, Jianwen Yin, Thomas R. Ioerger, Michael S. Miller, Dianxiang Xu, Richard A. Volz |
| 2000 | AAAI | An Adaptive Planner Based on Learning of Planning Performance. | Kreshna Gopal, Thomas R. Ioerger |
| 2000 | ITS | Training Teams with Collaborative Agents. | Michael S. Miller, Jianwen Yin, Richard A. Volz, Thomas R. Ioerger, John Yen |
| 1999 | AAAI | Detecting Feature Interactions from Accuracies of Random Feature Subsets. | Thomas R. Ioerger |
| 1999 | CIKM | An Adaptive Algorithm for Learning Changes in User Interests. | Dwi H. Widyantoro, Thomas R. Ioerger, John Yen |
| 1999 | ISMB | TEXTAL: A Pattern Recognition System for Interpreting Electron Density Maps. | Thomas R. Ioerger, Thomas Holton, Jon A. Christopher, James C. Sacchettini |
| 1997 | AAAI | Integrating a Spatial Reasoner with a Resolution Theorem-Prover. | Thomas R. Ioerger |
| 1997 | ISMB | The Context-Dependence of Amino Acid Properties. | Thomas R. Ioerger |
| 1993 | ISMB | Constructive Induction and Protein Tertiary Structure Prediction. | Thomas R. Ioerger, Larry A. Rendell, Shankar Subramaniam |