| 2025 | DNA | Synchronous Versus Asynchronous Tile-Based Self-Assembly. | Florent Becker, Phillip Drake, Matthew J. Patitz, Trent A. Rogers |
| 2025 | DNA | Tile Blockers as a Simple Motif to Control Self-Assembly: Kinetics and Thermodynamics. | Constantine G. Evans, Angel Cervera Roldan, Trent A. Rogers, Damien Woods |
| 2025 | DNA | An Axiomatic Study of Leveraging Blockers to Self-Assemble Arbitrary Shapes via Temperature Programming. | Matthew J. Patitz, Trent A. Rogers |
| 2018 | DNA | Know When to Fold 'Em: Self-assembly of Shapes by Folding in Oritatami. | Erik D. Demaine, Jacob Hendricks, Meagan Olsen, Matthew J. Patitz, Trent A. Rogers, Nicolas Schabanel, Shinnosuke Seki, Hadley Thomas |
| 2017 | DNA | Thermodynamic Binding Networks. | David Doty, Trent A. Rogers, David Soloveichik, Chris Thachuk, Damien Woods |
| 2016 | DNA | Hierarchical Self-Assembly of Fractals with Signal-Passing Tiles - (Extended Abstract). | Jacob Hendricks, Meagan Olsen, Matthew J. Patitz, Trent A. Rogers, Hadley Thomas |
| 2016 | DNA | Resiliency to Multiple Nucleation in Temperature-1 Self-Assembly. | Matthew J. Patitz, Trent A. Rogers, Robert T. Schweller, Scott M. Summers, Andrew Winslow |
| 2016 | FOCS | Universal Simulation of Directed Systems in the Abstract Tile Assembly Model Requires Undirectedness. | Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers |
| 2016 | SODA | Computing in continuous space with self-assembling polygonal tiles (extended abstract). | Oscar Gilbert, Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers |
| 2015 | DNA | Reflections on Tiles (in Self-Assembly). | Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers |
| 2015 | MCU | The Simulation Powers and Limitations of Hierarchical Self-Assembly Systems. | Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers |
| 2015 | SODA | Universal Computation with Arbitrary Polyomino Tiles in Non-Cooperative Self-Assembly. | Sndor P. Fekete, Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers, Robert T. Schweller |
| 2015 | UC | Replication of Arbitrary Hole-Free Shapes via Self-assembly with Signal-Passing Tiles. | Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers |
| 2014 | COCOON | The Power of Duples (in Self-Assembly): It's Not So Hip to Be Square. | Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers, Scott M. Summers |
| 2014 | UC | Doubles and Negatives are Positive (in Self-assembly). | Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers |
| 2013 | DNA | Signal Transmission across Tile Assemblies: 3D Static Tiles Simulate Active Self-assembly by 2D Signal-Passing Tiles. | Jacob Hendricks, Jennifer E. Padilla, Matthew J. Patitz, Trent A. Rogers |
| 2013 | ICALP | The Two-Handed Tile Assembly Model Is Not Intrinsically Universal. | Erik D. Demaine, Matthew J. Patitz, Trent A. Rogers, Robert T. Schweller, Scott M. Summers, Damien Woods |