| 2023 | GLOBECOM | Enhancing Cyber Threat Intelligence with Named Entity Recognition Using BERT-CRF. | Shengshan Chen, Ren-Hung Hwang, Chin-Yu Sun, Ying-Dar Lin, Tun-Wen Pai |
| 2022 | SMC | Intelligent DNA methylation biomarker selection for colorectal cancer. | Yi-Hsuan Tsai, Lucy Yi-Hsuan Lai, Yun-Te Liao, Shu-Jen Chen, Tun-Wen Pai, Margaret Dah-Tsyr Chang |
| 2017 | AINA | Construction of a Metadata Schema for Medical Data in Networking Applications. | Chi-Jane Chen, Tun-Wen Pai, Jhen-Li Huang, Ying-Tsang Lo, Shih-Syun Lin, Chun-Chao Yeh |
| 2017 | SMC | Autonomous exercise rehabilitation for heart failure patients based on six-minute walk test through Internet-of-Thing devices. | Shao-Jie Hsu, Shih-Syun Lin, Tun-Wen Pai, Chao-Hung Wang, Min-Hui Liu, Chi-Hsin Lee |
| 2017 | SoMeT | Data Based Feature Identification of Polymorphic Functional Marker from Transcriptome Comparison. | Cin-Han Yang, Tun-Wen Pai, Ron-Shan Chen, Hsin-Yiu Chou |
| 2016 | CISIS | Gene Ontology Based Clustering Analysis for Functionally Linked Genes and Cross-Species Comparison for SSR Biomarkers. | Yang-Chun Chang, Chien-Ming Chen, Tun-Wen Pai, Ron-Shan Cheng, Ming-Hsiung Chiu |
| 2016 | CISIS | Biological Pathway Analysis for De Novo Transcriptomes through Multiple Reference Species Selections. | Chun-Cheng Liu, Chien-Ming Chen, Cin-Han Yang, Tun-Wen Pai, Phaik-Eem Lim, Siew-Moi Phang, Sze-Wan Poong, Kok-Keong Lee |
| 2016 | SMC | Feature analysis on heart failure classes and associated medications. | Chi-Jim Chen, Ying-Tsang Lo, Jhen-Li Huang, Tun-Wen Pai, Min-Hui Liu, Chao-Hung Wang |
| 2016 | SMC | Proactive healthcare and an early warning mechanism for coronary artery disease patients using Internet-of-Thing devices. | Shao-Jie Hsu, Shih-Syun Lin, Tun-Wen Pai, Hamido Fujita |
| 2015 | CISIS | Exclusive Genomic Pathway Analysis for Groupers Infected by Different Iridovirus. | Chun-Cheng Liu, Chien-Ming Chen, Tun-Wen Pai, Hsin-Yiu Chou, Hui-Huang Hsu |
| 2014 | CISIS | Transcriptome Data Visualization in Pathways with Application to Zebrafish Embryo Datasets. | Chien-Ming Chen, Kuan Jung Lai, Tun-Wen Pai, Hao-Teng Chang |
| 2014 | CISIS | Epitope and Paratope Region Analysis. | Ying-Tsang Lo, Tun-Wen Pai, Hui-Huang Hsu, Huai Kuang Tsai |
| 2014 | SoMeT | Epitope Prediction Based on Geometric Spiral Features of Neighboring Surface Residues. | Ying-Tsang Lo, Hamido Fujita, Tun-Wen Pai |
| 2013 | CISIS | Discovering Feedback and Coupled Feedback Loops in KEGG Pathways through Cross-Map Identification. | Chen-Lung Liu, Chien-Ming Chen, Hui-Huang Hsu, Tun-Wen Pai |
| 2013 | CISIS | Mining Polymorphic SSRs from Individual Genome Sequences. | Yu-Lun Lu, Chien-Ming Chen, Tun-Wen Pai, Hao-Teng Chang |
| 2012 | CISIS | Ultrasonography Image Analysis for Detection and Classification of Chronic Kidney Disease. | Chih-Yin Ho, Tun-Wen Pai, Yuan-Chi Peng, Chien-Hung Lee, Yung-Chih Chen, Yang-Ting Chen, Kuo-Su Chen |
| 2012 | CISIS | Molecular Identification of a Unique Heparin Binding Motif Derived from Human RNase3. | Ping-Hsueh Kuo, Chien-Jung Chen, Pei-Chun Lien, Hsiu-Hui Chang, Shun-lung Fang, Margaret Dah-Tsyr Chang, Tun-Wen Pai |
| 2012 | CISIS | In Silico Prediction and In Vitro Characterization of Unique Function of Human RNase3. | Pei-Chun Lien, Chien-Jung Chen, Ping-Hsueh Kuo, Tun-Wen Pai, Hsiu-Hui Chang, Yiu-Kay Lai, Wei-Shuo Wu, Margaret Dah-Tsyr Chang |
| 2011 | CISIS | An Atomatic Fundus Image Analysis System for Clinical Diagnosis of Glaucoma. | Chih-Yin Ho, Tun-Wen Pai, Hao-Teng Chang, Hsin-Yi Chen |
| 2011 | CISIS | Multiscale SSR Tag Cloud Visualization for Biomarker Discovery. | Jhen-Li Huang, Chien-Ming Chen, Tun-Wen Pai, Liang Wei Zeng, Ron-Shan Cheng |
| 2011 | CISIS | A Hybrid Method of Propensity Scales and Support Vector Machine in a Linear Epitope Prediction. | Hsin-Wei Wang, Ya-Chi Lin, Tun-Wen Pai, Pei-Wen Tsai, Hao-Teng Chang |
| 2010 | CISIS | Prediction of Regulatory Molecules for Enhancement of EGFR Overexpression Triggered by Signal Peptide of Ribonuclease 3. | Hao-Teng Chang, Chung-Hsiao Chao, Yu-Fong Lin, Louis J. Tseng, Tun-Wen Pai, Tsan-Huang Shih, Margaret Dah-Tsyr Chang, Pei-Wen Tsai |
| 2010 | CISIS | A Comprehensive System for Identifying Internal Repeat Substructures of Proteins. | Hua-Ying Kao, Tsan-Huang Shih, Tun-Wen Pai, Ming-Da Lu, Hui-Huang Hsu |
| 2010 | ISPA | Using Solid Angles to Detect Protein Docking Regions by CUDA Parallel Algorithms. | Ying-Tsang Lo, Yueh-Lin Tsai, Hsin-Wei Wang, Yu-Ping Hsu, Tun-Wen Pai |
| 2009 | CISIS | B-Cell Conformational Epitope Prediction based on Structural Relationship and Antigenic Characteristics. | Wei-Kuo Wu, Wei-Chun Chung, Hao-Teng Chang, Ron-Shan Cheng, Tun-Wen Pai |
| 2009 | ICA3PP | Length Encoded Secondary Structure Profile for Remote Homologous Protein Detection. | Yen-Chu Hsu, Chien-Ming Chen, Tun-Wen Pai, Jyh-Fu Jeng, Chin-Hua Hu, Wen-Shyong Tzou |
| 2008 | CISIS | An SSR Comparative Genomics Database and Its Applications. | Tun-Wen Pai, Meng-Chang Hsiao, Chien-Ming Chen, Wen-Shyong Tzou, Ron-Shan Chen |
| 2005 | APBC | Unique peptide prediction of RNase family sequences based on reinforced merging algorithms. | Hao-Teng Chang, Tan-Chi Fan, Margaret Dah-Tsyr Chang, Tun-Wen Pai, Bo-Han Su, Pei-Chih Wu |
| 2005 | ICALT | Grouping and Interactive Learning Mechanism for Mathematics Learning Programs. | Po-How Chang, Tun-Wen Pai, Lee-Jyi Wang |
| 2004 | APBC | Ladderlike Stepping and Interval Jumping Searching Algorithms for DNA Sequences. | Tun-Wen Pai, Margaret Dah-Tsyr Chang, Jia-Han Chu, Wei-Yuan Chang, Hsiu Ling Tai |
| 1995 | ICDAR | An intelligent Chinese official document processing system. | Tun-Wen Pai, Tieh-Ming Wu, Gan-How Chang, Pei-Yih Ting |
| 1992 | CBMS | Morphological skeletonization for medical image compression. | Tun-Wen Pai, John H. L. Hansen |
| 1991 | ICASSP | An improved image coding algorithm using morphological operator theory. | Tun-Wen Pai, John H. L. Hansen |