| 2024 | RECOMB | Semi-supervised Learning While Controlling the FDR with an Application to Tandem Mass Spectrometry Analysis. | Jack Freestone, Lukas Kll, William Stafford Noble, Uri Keich |
| 2020 | RECOMB | Multiple Competition-Based FDR Control and Its Application to Peptide Detection. | Kristen Emery, Syamand Hasam, William Stafford Noble, Uri Keich |
| 2017 | RECOMB | Progressive Calibration and Averaging for Tandem Mass Spectrometry Statistical Confidence Estimation: Why Settle for a Single Decoy? | Uri Keich, William Stafford Noble |
| 2015 | RECOMB | A Symmetric Length-Aware Enrichment Test. | David Manescu, Uri Keich |
| 2006 | ISMB | Apples to apples: improving the performance of motif finders and their significance analysis in the Twilight Zone. | Patrick Ng, Niranjan Nagarajan, Neil Jones, Uri Keich |
| 2005 | ISMB | Computing the P-value of the information content from an alignment of multiple sequences. | Niranjan Nagarajan, Neil Jones, Uri Keich |
| 2004 | WABI | A Faster Reliable Algorithm to Estimate the p-Value of the Multinomial llr Statistic. | Uri Keich, Niranjan Nagarajan |
| 2003 | PSB | Genome-Wide Analysis of Bacterial Promoter Regions. | Eleazar Eskin, Uri Keich, Mikhail S. Gelfand, Pavel A. Pevzner |
| 2003 | RECOMB | Designing seeds for similarity search in genomic DNA. | Jeremy Buhler, Uri Keich, Yanni Sun |
| 2002 | RECOMB | Finding motifs in the twilight zone. | Uri Keich, Pavel A. Pevzner |