| 2023 | ICLR | Accuracy of white box and black box adversarial attacks on a sign activation 01 loss neural network ensemble. | Yunzhe Xue, Usman Roshan |
| 2020 | ICMLA | Towards adversarial robustness with 01 loss neural networks. | Yunzhe Xue, Meiyan Xie, Usman Roshan |
| 2020 | ICMLA | On the transferability of adversarial examples between convex and 01 loss models. | Yunzhe Xue, Meiyan Xie, Usman Roshan |
| 2019 | ICMLA | Stochastic Coordinate Descent for 01 Loss and Its Sensitivity to Adversarial Attacks. | Meiyan Xie, Yunzhe Xue, Usman Roshan |
| 2019 | IWANN | Exploring Classification, Clustering, and Its Limits in a Compressed Hidden Space of a Single Layer Neural Network with Random Weights. | Meiyan Xie, Usman Roshan |
| 2019 | IWANN | Image Classification and Retrieval with Random Depthwise Signed Convolutional Neural Networks. | Yunzhe Xue, Usman Roshan |
| 2018 | CIBCB | Cross-validation and cross-study validation of kidney cancer with machine learning and whole exome sequences from the National Cancer Institute. | Abdulrhman Aljouie, Nihir Patel, Usman Roshan |
| 2015 | ICMLA | Prediction of Continuous Phenotypes in Mouse, Fly, and Rice Genome Wide Association Studies with Support Vector Regression SNPs and Ridge Regression Classifier. | Abdulrhman Aljouie, Usman Roshan |
| 2006 | BIBE | Improving progressive alignment for phylogeny reconstruction using parsimonious guide-trees. | Usman Roshan, Dennis R. Livesay, Satish Chikkagoudar |
| 2005 | BIBE | Improved Phylogenetic Motif Detection Using Parsimony. | Usman Roshan, Dennis R. Livesay, David La |
| 2005 | HPCC | Parallel Divide-and-Conquer Phylogeny Reconstruction by Maximum Likelihood. | Z. Du, Alexandros Stamatakis, F. Lin, Usman Roshan, Luay Nakhleh |
| 2005 | ICPADS | PRec-I-DCM3: A Parallel Framework for Fast and Accurate Large Scale Phylogeny Reconstruction. | Cristian Coarfa, Yuri Dotsenko, John M. Mellor-Crummey, Luay Nakhleh, Usman Roshan |
| 2002 | PSB | The Accuracy of Fast Phylogenetic Methods for Large Datasets. | Luay Nakhleh, Bernard M. E. Moret, Usman Roshan, Katherine St. John, Jerry Sun, Tandy J. Warnow |
| 2002 | WABI | Sequence-Length Requirements for Phylogenetic Methods. | Bernard M. E. Moret, Usman Roshan, Tandy J. Warnow |
| 2002 | WABI | Estimating the Deviation from a Molecular Clock. | Luay Nakhleh, Usman Roshan, Lisa Vawter, Tandy J. Warnow |
| 2001 | ISMB | Designing fast converging phylogenetic methods. | Luay Nakhleh, Usman Roshan, Katherine St. John, Jerry Sun, Tandy J. Warnow |
| 2001 | WABI | The Performance of Phylogenetic Methods on Trees of Bounded Diameter. | Luay Nakhleh, Usman Roshan, Katherine St. John, Jerry Sun, Tandy J. Warnow |