| 2018 | GECCO | Genetic programming for tuberculosis screening from raw X-ray images. | Armand R. Burks, William F. Punch |
| 2015 | GECCO | An Efficient Structural Diversity Technique for Genetic Programming. | Armand R. Burks, William F. Punch |
| 2015 | GECCO | Gray-Box Optimization using the Parameter-less Population Pyramid. | Brian W. Goldman, William F. Punch |
| 2014 | GECCO | Parameter-less population pyramid. | Brian W. Goldman, William F. Punch |
| 2013 | EUROGP | Reducing Wasted Evaluations in Cartesian Genetic Programming. | Brian W. Goldman, William F. Punch |
| 2013 | GECCO | Length bias and search limitations in cartesian genetic programming. | Brian W. Goldman, William F. Punch |
| 2011 | CEC | Co-evolving data driven models and test data sets with the application to forecast chaotic time series. | Masoud Mirmomeni, William F. Punch |
| 2010 | SIGCSE | Performance of python CS1 students in mid-level non-python CS courses. | Richard J. Enbody, William F. Punch |
| 2009 | SAC | Combining statistics and semantics via ensemble model for document clustering. | Samah Jamal Fodeh, William F. Punch, Pang-Ning Tan |
| 2009 | SIGCSE | Python CS1 as preparation for C++ CS2. | Richard J. Enbody, William F. Punch, Mark McCullen |
| 2007 | ICDM | Recommendation via Query Centered Random Walk on K-Partite Graph. | Haibin Cheng, Pang-Ning Tan, Jon Sticklen, William F. Punch |
| 2006 | GECCO | Crossover gene selection by spatial location. | David M. Cherba, William F. Punch |
| 2005 | GECCO | Conformation of an ideal bucky ball molecule by genetic algorithm and geometric constraint from pair distance data: genetic algorithm. | David M. Cherba, William F. Punch, Phillip M. Duxbury, Simon J. L. Billinge, Pavol Juhas |
| 2004 | ICMLA | Mining interesting contrast rules for a web-based educational system. | Behrouz Minaei-Bidgoli, Pang-Ning Tan, William F. Punch |
| 2004 | ICPR | Adaptive Clustering Ensembles. | Alexander P. Topchy, Behrouz Minaei-Bidgoli, Anil K. Jain, William F. Punch |
| 2004 | IRI | Association Rule Analysis for an Online Education System. | Behrouz Minaei-Bidgoli, Gerd Kortemeyer, William F. Punch |
| 2004 | SDM | A Mixture Model for Clustering Ensembles. | Alexander P. Topchy, Anil K. Jain, William F. Punch |
| 2004 | SSPR | Optimizing Classification Ensembles via a Genetic Algorithm for a Web-Based Educational System. | Behrouz Minaei-Bidgoli, Gerd Kortemeyer, William F. Punch |
| 2003 | GECCO | Using Genetic Algorithms for Data Mining Optimization in an Educational Web-Based System. | Behrouz Minaei-Bidgoli, William F. Punch |
| 2003 | GECCO | Dimensionality Reduction via Genetic Value Clustering. | Alexander P. Topchy, William F. Punch |
| 2003 | ICDM | Combining Multiple Weak Clusterings. | Alexander P. Topchy, Anil K. Jain, William F. Punch |
| 2000 | GECCO | Experimental Study of Isolated Multipulation Genetic Programming. | Francisco Fernndez, Marco Tomassini, William F. Punch, J. M. Snchez |
| 2000 | GECCO | GP+Echo+Subsumption = Improved Problem Solving. | William F. Punch, W. M. Rand |