| 2024 | STACS | A Faster Algorithm for Constructing the Frequency Difference Consensus Tree. | Jesper Jansson, Wing-Kin Sung, Seyed Ali Tabatabaee, Yutong Yang |
| 2023 | CPM | MUL-Tree Pruning for Consistency and Compatibility. | Christopher Hampson, Daniel J. Harvey, Costas S. Iliopoulos, Jesper Jansson, Zara Lim, Wing-Kin Sung |
| 2023 | WALCOM | Finding the Cyclic Covers of a String. | Roberto Grossi, Costas S. Iliopoulos, Jesper Jansson, Zara Lim, Wing-Kin Sung, Wiktor Zuba |
| 2020 | ICLR | Weakly Supervised Clustering by Exploiting Unique Class Count. | Mustafa Umit Oner, Hwee Kuan Lee, Wing-Kin Sung |
| 2019 | IWOCA | Computing the Rooted Triplet Distance Between Phylogenetic Networks. | Jesper Jansson, Konstantinos Mampentzidis, Ramesh Rajaby, Wing-Kin Sung |
| 2019 | WALCOM | A Linear Time Algorithm for the r-Gathering Problem on the Line (Extended Abstract). | Anik Sarker, Wing-Kin Sung, M. Sohel Rahman |
| 2019 | WALCOM | Greedy Consensus Tree and Maximum Greedy Consensus Tree Problems. | Wing-Kin Sung |
| 2018 | ICALP | A Faster Construction of Greedy Consensus Trees. | Pawel Gawrychowski, Gad M. Landau, Wing-Kin Sung, Oren Weimann |
| 2017 | COCOA | Faster Algorithms for 1-Mappability of a Sequence. | Mai Alzamel, Panagiotis Charalampopoulos, Costas S. Iliopoulos, Solon P. Pissis, Jakub Radoszewski, Wing-Kin Sung |
| 2017 | EANN | Efficient Identification of k-Closed Strings. | Hayam Alamro, Mai Alzamel, Costas S. Iliopoulos, Solon P. Pissis, Steven Watts, Wing-Kin Sung |
| 2017 | IWOCA | Computing Asymmetric Median Tree of Two Trees via Better Bipartite Matching Algorithm. | Ramesh Rajaby, Wing-Kin Sung |
| 2017 | RECOMB | Determining the Consistency of Resolved Triplets and Fan Triplets. | Jesper Jansson, Andrzej Lingas, Ramesh Rajaby, Wing-Kin Sung |
| 2016 | MFCS | Minimal Phylogenetic Supertrees and Local Consensus Trees. | Jesper Jansson, Wing-Kin Sung |
| 2015 | STACS | On Finding the Adams Consensus Tree. | Jesper Jansson, Zhaoxian Li, Wing-Kin Sung |
| 2014 | ISAAC | Faster Algorithms for Computing the R* Consensus Tree. | Jesper Jansson, Wing-Kin Sung, Hoa Vu, Siu-Ming Yiu |
| 2013 | RECOMB | An Optimal Algorithm for Building the Majority Rule Consensus Tree. | Jesper Jansson, Chuanqi Shen, Wing-Kin Sung |
| 2013 | RECOMB | Inference of Spatial Organizations of Chromosomes Using Semi-definite Embedding Approach and Hi-C Data. | ZhiZhuo Zhang, Guoliang Li, Kim-Chuan Toh, Wing-Kin Sung |
| 2013 | SODA | Improved Algorithms for Constructing Consensus Trees. | Jesper Jansson, Chuanqi Shen, Wing-Kin Sung |
| 2013 | WABI | Algorithms for the Majority Rule (+) Consensus Tree and the Frequency Difference Consensus Tree. | Jesper Jansson, Chuanqi Shen, Wing-Kin Sung |
| 2012 | AAIM | Fast Relative Lempel-Ziv Self-index for Similar Sequences. | Huy Hoang Do, Jesper Jansson, Kunihiko Sadakane, Wing-Kin Sung |
| 2012 | ICALP | CRAM: Compressed Random Access Memory. | Jesper Jansson, Kunihiko Sadakane, Wing-Kin Sung |
| 2012 | RECOMB | Simultaneously Learning DNA Motif along with Its Position and Sequence Rank Preferences through EM Algorithm. | ZhiZhuo Zhang, Cheng Wei Chang, Hugo Willy, Edwin Cheung, Wing-Kin Sung |
| 2011 | COCOON | Compressed Directed Acyclic Word Graph with Application in Local Alignment. | Huy Hoang Do, Wing-Kin Sung |
| 2011 | IRI | Mining transcriptional association rules from breast cancer profile data. | Rakhi Malpani, Meiliu Lu, Du Zhang, Wing-Kin Sung |
| 2011 | ISAAC | Algorithms for Building Consensus MUL-trees. | Yun Cui, Jesper Jansson, Wing-Kin Sung |
| 2011 | RECOMB | Opera: Reconstructing Optimal Genomic Scaffolds with High-Throughput Paired-End Sequences. | Song Gao, Niranjan Nagarajan, Wing-Kin Sung |
| 2010 | AAIM | Indexing Similar DNA Sequences. | Songbo Huang, Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Siu-Ming Yiu |
| 2010 | ESA | Constructing the R* Consensus Tree of Two Trees in Subcubic Time. | Jesper Jansson, Wing-Kin Sung |
| 2009 | ISAAC | Computing a Smallest Multi-labeled Phylogenetic Tree from Rooted Triplets. | Sylvain Guillemot, Jesper Jansson, Wing-Kin Sung |
| 2009 | SIROCCO | More Efficient Periodic Traversal in Anonymous Undirected Graphs. | Jurek Czyzowicz, Stefan Dobrev, Leszek Gasieniec, David Ilcinkas, Jesper Jansson, Ralf Klasing, Ioannis Lignos, Russell A. Martin, Kunihiko Sadakane, Wing-Kin Sung |
| 2009 | WABI | Structural Alignment of RNA with Complex Pseudoknot Structure. | Thomas K. F. Wong, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu |
| 2008 | ICCS | A Streamlined and Generalized Analysis of Chromatin ImmunoPrecipitation Paired-End diTag Data. | Vinsensius B. Vega, Yijun Ruan, Wing-Kin Sung |
| 2008 | STACS | Fixed Parameter Polynomial Time Algorithms for Maximum Agreement and Compatible Supertrees. | Viet Tung Hoang, Wing-Kin Sung |
| 2007 | COCOA | An Experimental Study of Compressed Indexing and Local Alignments of DNA. | Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Chi-Kwong Wong, Siu-Ming Yiu |
| 2007 | ICDE | CPS-tree: A Compact Partitioned Suffix Tree for Disk-based Indexing on Large Genome Sequences. | Swee-Seong Wong, Wing-Kin Sung, Limsoon Wong |
| 2007 | ISAAC | Space Efficient Indexes for String Matching with Don't Cares. | Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Siu-Ming Yiu |
| 2007 | RECOMB | RB-Finder: An Improved Distance-Based Sliding Window Method to Detect Recombination Breakpoints. | Wah-Heng Lee, Wing-Kin Sung |
| 2007 | SODA | Ultra-succinct representation of ordered trees. | Jesper Jansson, Kunihiko Sadakane, Wing-Kin Sung |
| 2007 | WABI | The Point Placement Problem on a Line - Improved Bounds for Pairwise Distance Queries. | Francis Y. L. Chin, Henry C. M. Leung, Wing-Kin Sung, Siu-Ming Yiu |
| 2006 | CPM | A Linear Size Index for Approximate Pattern Matching. | Ho-Leung Chan, Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Swee-Seong Wong |
| 2006 | ESA | Compressed Indexes for Approximate String Matching. | Ho-Leung Chan, Tak Wah Lam, Wing-Kin Sung, Siu-Lung Tam, Swee-Seong Wong |
| 2006 | ICTAI | Learning Gene Network Using Conditional Dependence. | Tie-Fei Liu, Wing-Kin Sung |
| 2006 | ICTAI | LocalMotif - An In-Silico Tool for Detecting Localized Motifs in Regulatory Sequences. | Vipin Narang, Wing-Kin Sung, Ankush Mittal |
| 2006 | PAKDD | Exploiting Indirect Neighbours and Topological Weight to Predict Protein Function from Protein-Protein Interactions. | Hon Nian Chua, Wing-Kin Sung, Limsoon Wong |
| 2005 | APBC | A better gap penalty for pairwise SVM. | Hon Nian Chua, Wing-Kin Sung |
| 2005 | APBC | Inferring phylogenetic relationships avoiding forbidden rooted triplets. | Ying-Jun He, Trinh N. D. Huynh, Jesper Jansson, Wing-Kin Sung |
| 2005 | APBC | Allowing mismatches in anchors for wholw genome alignment: Generation and effectiveness. | Siu-Ming Yiu, P. Y. Chan, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting, Prudence W. H. Wong |
| 2005 | BIBE | Multimodality as a Criterion for Feature Selection in Unsupervised Analysis of Gene Expression Data. | Yi Li, Wing-Kin Sung, Lance D. Miller |
| 2005 | BIBE | ConstrainedMotif: A Periodicity Constraint Based Algorithm to Predict Cell-Cycle Associated Promoter Motifs Using Time-Course Gene Expression Data. | Yingren Liu, Karuturi R. Krishna Murthy, Wing-Kin Sung |
| 2005 | ISAAC | Improved Approximate String Matching Using Compressed Suffix Data Structures. | Tak Wah Lam, Wing-Kin Sung, Swee-Seong Wong |
| 2005 | ISAAC | Fast Algorithms for Computing the Tripartition-Based Distance Between Phylogenetic Networks. | Nguyen Bao Nguyen, C. Thach Nguyen, Wing-Kin Sung |
| 2005 | MMSP | Discriminative Fusion Approach for Automatic Image Annotation. | De-Hong Wang, Sheng Gao, Qi Tian, Wing-Kin Sung |
| 2005 | RECOMB | Constructing a Smallest Refining Galled Phylogenetic Network. | Trinh N. D. Huynh, Jesper Jansson, Nguyen Bao Nguyen, Wing-Kin Sung |
| 2005 | SODA | Algorithms for combining rooted triplets into a galled phylogenetic network. | Jesper Jansson, Nguyen Bao Nguyen, Wing-Kin Sung |
| 2005 | SIROCCO | Finding Short Right-Hand-on-the-Wall Walks in Graphs. | Stefan Dobrev, Jesper Jansson, Kunihiko Sadakane, Wing-Kin Sung |
| 2004 | ALENEX | Practical aspects of Compressed Suffix Arrays and FM-Index in Searching DNA Sequences. | Wing-Kai Hon, Tak Wah Lam, Wing-Kin Sung, Wai-Leuk Tse, Chi-Kwong Wong, Siu-Ming Yiu |
| 2004 | BIBE | A Mutation-Sensitive Approach for Locating Conserved Gene Pairs between Related Species. | Ho-Leung Chan, Tak Wah Lam, Wing-Kin Sung, Prudence W. H. Wong, Siu-Ming Yiu |
| 2004 | BIBE | Constraint Based Method for Finding Motifs in DNA Sequences. | Xiaoan Dong, Sam Yuan Sung, Wing-Kin Sung, Chew Lim Tan |
| 2004 | BIBE | Discovering Novel Interacting Motif Pairs from Large Protein-Protein Interaction Datasets. | Soon-Heng Tan, Wing-Kin Sung, See-Kiong Ng |
| 2004 | COCOON | Inferring a Level-1 Phylogenetic Network from a Dense Set of Rooted Triplets. | Jesper Jansson, Wing-Kin Sung |
| 2004 | CPM | Approximate String Matching Using Compressed Suffix Arrays. | Trinh N. D. Huynh, Wing-Kai Hon, Tak Wah Lam, Wing-Kin Sung |
| 2004 | DCC | Compressed Index for Dynamic Text. | Wing-Kai Hon, Tak Wah Lam, Kunihiko Sadakane, Wing-Kin Sung, Siu-Ming Yiu |
| 2004 | ECAI | Gene Network Modeling through Semi-Fixed Bayesian Network. | Tie-Fei Liu, Wing-Kin Sung, Ankush Mittal |
| 2004 | ICIP | News sports video shot classification with sports play field and motion features. | De-Hong Wang, Qi Tian, Sheng Gao, Wing-Kin Sung |
| 2004 | ISAAC | Local Gapped Subforest Alignment and Its Application in Finding RNA Structural Motifs. | Jesper Jansson, Ngo Trung Hieu, Wing-Kin Sung |
| 2004 | ISAAC | The Maximum Agreement of Two Nested Phylogenetic Networks. | Jesper Jansson, Wing-Kin Sung |
| 2004 | ICTAI | Learning Multi-Time Delay Gene Network Using Bayesian Network Framework. | Tie-Fei Liu, Wing-Kin Sung, Ankush Mittal |
| 2004 | LATIN | Rooted Maximum Agreement Supertrees. | Jesper Jansson, Joseph H.-K. Ng, Kunihiko Sadakane, Wing-Kin Sung |
| 2004 | PSB | Protein Structure and Fold Prediction Using Tree-Augmented Bayesian Classifier. | Arunkumar Chinnasamy, Wing-Kin Sung, Ankush Mittal |
| 2004 | WABI | A Faster and More Space-Efficient Algorithm for Inferring Arc-Annotations of RNA Sequences Through Alignment. | Jesper Jansson, See-Kiong Ng, Wing-Kin Sung, Hugo Willy |
| 2003 | CAIP | Video Retrieval by Context-Based Interpretation of Time-to-Collision Descriptors. | Ankush Mittal, Wing-Kin Sung |
| 2003 | COCOON | On All-Substrings Alignment Problems. | Wei Fu, Wing-Kai Hon, Wing-Kin Sung |
| 2003 | FOCS | Breaking a Time-and-Space Barrier in Constructing Full-Text Indices. | Wing-Kai Hon, Kunihiko Sadakane, Wing-Kin Sung |
| 2003 | ISAAC | Constructing Compressed Suffix Arrays with Large Alphabets. | Wing-Kai Hon, Tak Wah Lam, Kunihiko Sadakane, Wing-Kin Sung |
| 2003 | ISAAC | Succinct Data Structures for Searchable Partial Sums. | Wing-Kai Hon, Kunihiko Sadakane, Wing-Kin Sung |
| 2002 | COCOON | A Space and Time Efficient Algorithm for Constructing Compressed Suffix Arrays. | Tak Wah Lam, Kunihiko Sadakane, Wing-Kin Sung, Siu-Ming Yiu |
| 2002 | WABI | On the Control of Hybridization Noise in DNA Sequencing-by-Hybridization. | Hon Wai Leong, Franco P. Preparata, Wing-Kin Sung, Hugo Willy |
| 2001 | BIBE | Predicting RNA Secondary Structures with Arbitrary Pseudoknots by Maximizing the Number of Stacking Pairs. | Samuel Ieong, Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu |
| 2001 | WWW | Pervasive Multimedia Markup Language (PMML): an XML-based multimedia content specification for pervasive access. | Wing-Kin Sung, Frank C. H. Tong, Kwok-Ho Yeung, David Wai-Lok Cheung, Chung-Jen Tan, William Wei Song |
| 2000 | CPM | A Faster and Unifying Algorithm for Comparing Trees. | Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting |
| 2000 | ISAAC | Unbalanced and Hierarchical Bipartite Matchings with Applications to Labeled Tree Comparison. | Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting |
| 1999 | ESA | A Decomposition Theorem for Maximum Weight Bipartite Matchings with Applications to Evolutionary Trees. | Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting |
| 1997 | ISAAC | All-Cavity Maximum Matchings. | Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting |
| 1997 | STOC | General Techniques for Comparing Unrooted Evolutionary Trees. | Ming-Yang Kao, Tak Wah Lam, Teresa M. Przytycka, Wing-Kin Sung, Hing-Fung Ting |