| 2026 | DCC | Dynamic r-Index: An Updatable Self-Index in LCP-Bounded Time. | Takaaki Nishimoto, Yasuo Tabei |
| 2026 | ESA | Dynamic Grammar-Compressed Self-Index in δ-Optimal Space. | Takaaki Nishimoto, Yasuo Tabei |
| 2024 | ICPRAM | A Branch-and-Bound Approach to Efficient Classification and Retrieval of Documents. | Kotaro Ii, Hiroto Saigo, Yasuo Tabei |
| 2022 | ICALP | An Optimal-Time RLBWT Construction in BWT-Runs Bounded Space. | Takaaki Nishimoto, Shunsuke Kanda, Yasuo Tabei |
| 2021 | CPM | R-enum: Enumeration of Characteristic Substrings in BWT-runs Bounded Space. | Takaaki Nishimoto, Yasuo Tabei |
| 2021 | ICALP | Optimal-Time Queries on BWT-Runs Compressed Indexes. | Takaaki Nishimoto, Yasuo Tabei |
| 2020 | ICDM | Dynamic Similarity Search on Integer Sketches. | Shunsuke Kanda, Yasuo Tabei |
| 2020 | ICPR | Automatically mining Relevant Variable Interactions Via Sparse Bayesian Learning. | Ryoichiro Yafune, Daisuke Sakuma, Mirai Takayanagi, Yasuo Tabei, Noritaka Saito, Hiroto Saigo |
| 2019 | CPM | Conversion from RLBWT to LZ77. | Takaaki Nishimoto, Yasuo Tabei |
| 2019 | DCC | LZRR: LZ77 Parsing with Right Reference. | Takaaki Nishimoto, Yasuo Tabei |
| 2019 | ICDM | Space-Efficient Feature Maps for String Alignment Kernels. | Yasuo Tabei, Yoshihiro Yamanishi, Rasmus Pagh |
| 2018 | DCC | A Dynamic Compressed Self-Index for Highly Repetitive Text Collections. | Takaaki Nishimoto, Yoshimasa Takabatake, Yasuo Tabei |
| 2018 | ICDM | Entire Regularization Path for Sparse Nonnegative Interaction Model. | Mirai Takayanagi, Yasuo Tabei, Hiroto Saigo |
| 2018 | ISITA | Scalable Machine Learning on Compact Data Representations. | Yasuo Tabei |
| 2017 | IJCAI | Bayesian Dynamic Mode Decomposition. | Naoya Takeishi, Yoshinobu Kawahara, Yasuo Tabei, Takehisa Yairi |
| 2017 | SISAP | Scalable Similarity Search for Molecular Descriptors. | Yasuo Tabei, Simon J. Puglisi |
| 2016 | KDD | Scalable Partial Least Squares Regression on Grammar-Compressed Data Matrices. | Yasuo Tabei, Hiroto Saigo, Yoshihiro Yamanishi, Simon J. Puglisi |
| 2015 | DCC | Queries on LZ-Bounded Encodings. | Djamal Belazzougui, Travis Gagie, Pawel Gawrychowski, Juha Krkkinen, Alberto Ordez Pereira, Simon J. Puglisi, Yasuo Tabei |
| 2015 | ESA | Access, Rank, and Select in Grammar-compressed Strings. | Djamal Belazzougui, Patrick Hagge Cording, Simon J. Puglisi, Yasuo Tabei |
| 2015 | SPIRE | Online Self-Indexed Grammar Compression. | Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto |
| 2014 | DCC | Fully Online Grammar Compression in Constant Space. | Shirou Maruyama, Yasuo Tabei |
| 2014 | SPIRE | Online Pattern Matching for String Edit Distance with Moves. | Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto |
| 2013 | CPM | A Succinct Grammar Compression. | Yasuo Tabei, Yoshimasa Takabatake, Hiroshi Sakamoto |
| 2013 | KDD | Succinct interval-splitting tree for scalable similarity search of compound-protein pairs with property constraints. | Yasuo Tabei, Akihiro Kishimoto, Masaaki Kotera, Yoshihiro Yamanishi |
| 2013 | SPIRE | Fully-Online Grammar Compression. | Shirou Maruyama, Yasuo Tabei, Hiroshi Sakamoto, Kunihiko Sadakane |
| 2012 | SPIRE | Variable-Length Codes for Space-Efficient Grammar-Based Compression. | Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto |
| 2012 | WABI | Succinct Multibit Tree: Compact Representation of Multibit Trees by Using Succinct Data Structures in Chemical Fingerprint Searches. | Yasuo Tabei |
| 2011 | PAKDD | LGM: Mining Frequent Subgraphs from Linear Graphs. | Yasuo Tabei, Daisuke Okanohara, Shuichi Hirose, Koji Tsuda |
| 2011 | SDM | Kernel-based Similarity Search in Massive Graph Databases with Wavelet Trees. | Yasuo Tabei, Koji Tsuda |