| 2018 | IWOCA | Placing Segments on Parallel Arcs. | Yen Kaow Ng, Wenlong Jia, Shuai Cheng Li |
| 2012 | CPM | Finding Longest Common Segments in Protein Structures in Nearly Linear Time. | Yen Kaow Ng, Hirotaka Ono, Ling Ge, Shuai Cheng Li |
| 2009 | ISAAC | On Protein Structure Alignment under Distance Constraint. | Shuai Cheng Li, Yen Kaow Ng |
| 2008 | DNA | Speeding Up Local-Search Type Algorithms for Designing DNA Sequences under Thermodynamical Constraints. | Suguru Kawashimo, Yen Kaow Ng, Hirotaka Ono, Kunihiko Sadakane, Masafumi Yamashita |
| 2008 | FAW | A PTAS for the k-Consensus Structures Problem Under Euclidean Squared Distance. | Shuai Cheng Li, Yen Kaow Ng, Louxin Zhang |
| 2006 | PAKDD | Finding Consensus Patterns in Very Scarce Biosequence Samples from Their Minimal Multiple Generalizations. | Yen Kaow Ng, Takeshi Shinohara |
| 2005 | ALT | Inferring Unions of the Pattern Languages by the Most Fitting Covers. | Yen Kaow Ng, Takeshi Shinohara |
| 2005 | COCOON | Best Fitting Fixed-Length Substring Patterns for a Set of Strings. | Hirotaka Ono, Yen Kaow Ng |
| 2005 | DIS | Measuring Over-Generalization in the Minimal Multiple Generalizations of Biosequences. | Yen Kaow Ng, Hirotaka Ono, Takeshi Shinohara |
| 2001 | ALT | Learning Languages in a Union. | Sanjay Jain, Yen Kaow Ng, Tiong Seng Tay |