| 2016 | SNPD | Design patterns applied for game design patterns. | Junfeng Qu, Yinglei Song, Yong Wei |
| 2014 | SNPD | Design patterns applied for networked first person shooting game programming. | Junfeng Qu, Yong Wei, Yinglei Song |
| 2009 | CIBCB | Haplotype inference using a genetic algorithm. | Dongsheng Che, Haibao Tang, Yinglei Song |
| 2009 | IKE | PaperGuard: A Support Vector Machine Approach for Screening Machine Generated Papers. | Junfeng Qu, Muhammad A. Rahman, Yinglei Song, Lei Zhu, Yong Wei, Weihu Hong, Hamid R. Arabnia |
| 2008 | ICMLA | Clustering for DNA Microarray Data Analysis with a Graph Cut Based Algorithm. | Jia Song, Chunmei Liu, Yinglei Song, Junfeng Qu |
| 2008 | IKE | Knowledge Retrieval in Financial Domain. | Junfeng Qu, Yinglei Song, Hamid R. Arabnia, Byron Jeff |
| 2007 | ICMLA | Alignment of Multiple Proteins with an Ensemble of Hidden Markov Models. | Jia Song, Chunmei Liu, Yinglei Song, Junfeng Qu |
| 2007 | IKE | Time Series Similarity Matching with a New Distance Measure. | Junfeng Qu, Hamid R. Arabnia, Yinglei Song, Khaled Rasheed, Jack Houston |
| 2007 | WABI | RNA Folding Including Pseudoknots: A New Parameterized Algorithm and Improved Upper Bound. | Chunmei Liu, Yinglei Song, Louis W. Shapiro |
| 2006 | ISAAC | Exact Algorithms for Finding the Minimum Independent Dominating Set in Graphs. | Chunmei Liu, Yinglei Song |
| 2006 | ISMB | Peptide sequence tag-based blind identification of post-translational modifications with point process model. | Chunmei Liu, Bo Yan, Yinglei Song, Ying Xu, Liming Cai |
| 2006 | PSB | Fast De novo Peptide Sequencing and Spectral Alignment via Tree Decomposition. | Chunmei Liu, Yinglei Song, Bo Yan, Ying Xu, Liming Cai |
| 2006 | WABI | Phylogenetic Network Inferences Through Efficient Haplotyping. | Yinglei Song, Chunmei Liu, Russell L. Malmberg, Liming Cai |
| 2005 | GECCO | MDGA: motif discovery using a genetic algorithm. | Dongsheng Che, Yinglei Song, Khaled Rasheed |
| 2005 | ICCS | Profiling and Searching for RNA Pseudoknot Structures in Genomes. | Chunmei Liu, Yinglei Song, Russell L. Malmberg, Liming Cai |
| 2005 | WABI | Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment. | Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai |